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The map label for this gene is secF [H]

Identifier: 114798600

GI number: 114798600

Start: 1995200

End: 1996189

Strand: Reverse

Name: secF [H]

Synonym: HNE_1925

Alternate gene names: 114798600

Gene position: 1996189-1995200 (Counterclockwise)

Preceding gene: 114798563

Following gene: 114797116

Centisome position: 53.88

GC content: 58.59

Gene sequence:

>990_bases
ATGCTGATCAAATACTGGCCAACTGAAACCAAAATTCCCTTCATGCGGTATCGCTATGTCGGGGTGGTGCTGTCCGTGAT
CATGATGGTGGCTTCGGTCTATCTCGTCATGACACGGGGGCTGAACCTCGGCGTCGACTTTGCCGGCGGTTCGGTGGTCG
AACTGCGTCAGACCGACAGCGTGACGGTTGCTGATGTCCGCGACCGGATACCCGGCGGCCTGACGGTGAACTCGGCGACG
GACAGCAATGGCGCCGAACTGGTGGTCATCCGGTTCGGTGAGGTCGATGCATCCCTCCTGGGGCCGGAATTCGCCGAGCT
GACAGATGAGGAAAAGGCAGATCGCGCATCGGCGGCCTCCAACACCTTCGTTGTGAACACGCTCAAGCAGGAGTTTGGGC
TGACCGACCAGGACATCCTCCGGAACGATTCAGTTGGTCCCAAAGTGTCGGGCGAACTTTTCCGTGAGGGTCTGATCGCG
CTGGGCGTGGCGACCATCATGATGTTCCTCTACATCGCCTTCCGGTACAGCTGGTCGTATGCTGTCGGCGGTATTGCGGC
GCTCATCCATGACGCGATCGGAACGATCGGACTGTTCTCGCTGCTGCAGATCCAGTTCGATCTGACGACGATCGCCGCTC
TGTTGACGATCATCGGCTATTCGGTCAACGACTCGGTTGTCGTGTTCGACCGGATCCGCGAGATCCGCCGGAAATATAAA
CAGATGCCGGCGACCGAAGTTATCGACATTGCAACCAACCAGACCCTTTCGCGCACCTTCCTGACAGGCGGCACGACGCT
GATCGCGATCCTGGCGATTGCGATCTTTGGTGGCCCGGTGCTTCAGGGCATGAGCGTCGCCATGATCTGGGGCATTATCA
TCGGCACGTATTCGTCGATCTACTTCGCAGCGGCCATCGTTCTGATGCTCGGCGTCGACATCAATCGCAAGCCGGTGGAA
GATACGCCGGGCTTTGAGGCAATGCCGTAA

Upstream 100 bases:

>100_bases
AGTGTTCACCGCCTTTGTGTTCACCCGGATGCTGACGATCTTCTGGATGAAGACCTTCAAGACCAAACGCTTCGCTATCT
AGGCCGTTGAGGACAGACAC

Downstream 100 bases:

>100_bases
CGCGGACGCATTAACTGGTGCACAAGAAAAAAGCCGGACCTCATCGAGGCCCGGCCTTTTTCTTTGGAAAGCGTTCCTGC
TTCAGACGTTGAAGCGGAAC

Product: protein-export membrane protein SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MLIKYWPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDSVTVADVRDRIPGGLTVNSAT
DSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAASNTFVVNTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIA
LGVATIMMFLYIAFRYSWSYAVGGIAALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKYK
QMPATEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSIYFAAAIVLMLGVDINRKPVE
DTPGFEAMP

Sequences:

>Translated_329_residues
MLIKYWPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDSVTVADVRDRIPGGLTVNSAT
DSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAASNTFVVNTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIA
LGVATIMMFLYIAFRYSWSYAVGGIAALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKYK
QMPATEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSIYFAAAIVLMLGVDINRKPVE
DTPGFEAMP
>Mature_329_residues
MLIKYWPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDSVTVADVRDRIPGGLTVNSAT
DSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAASNTFVVNTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIA
LGVATIMMFLYIAFRYSWSYAVGGIAALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKYK
QMPATEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSIYFAAAIVLMLGVDINRKPVE
DTPGFEAMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=305, Percent_Identity=35.4098360655738, Blast_Score=190, Evalue=1e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 35720; Mature: 35720

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIKYWPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDS
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCC
VTVADVRDRIPGGLTVNSATDSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAAS
EEEHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHCCHHHHHCCHHHHHHHHHCC
NTFVVNTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIALGVATIMMFLYIAFRYSWSY
CCEEEEEHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGGIAALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHH
QMPATEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSI
HCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YFAAAIVLMLGVDINRKPVEDTPGFEAMP
HHHHHHHHHHCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLIKYWPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDS
CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCC
VTVADVRDRIPGGLTVNSATDSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAAS
EEEHHHHHCCCCCEEECCCCCCCCCEEEEEEECCCCHHHHCCHHHHHCCHHHHHHHHHCC
NTFVVNTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIALGVATIMMFLYIAFRYSWSY
CCEEEEEHHHHHCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVGGIAALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKYK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHH
QMPATEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSI
HCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
YFAAAIVLMLGVDINRKPVEDTPGFEAMP
HHHHHHHHHHCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9175857 [H]