Click here to switch to the map view.

The map label for this gene is rodA [H]

Identifier: 114797109

GI number: 114797109

Start: 3090718

End: 3091845

Strand: Reverse

Name: rodA [H]

Synonym: HNE_2933

Alternate gene names: 114797109

Gene position: 3091845-3090718 (Counterclockwise)

Preceding gene: 114797905

Following gene: 114799725

Centisome position: 83.45

GC content: 63.12

Gene sequence:

>1128_bases
ATGCCCTGGGGCATCATCTTTCTCATTGTCGGCGTCGGGCTCGTCGGCGTCGCCATGCTGTTTTCGGTCGGCTGGGATCC
TGTCGCCCAGGCCCCTTCGGCCAGTGAAGCCGGCCTCTGGCGCGAACAGCTGACCCGTCTCGGCATCGGCTTTGTCATCA
TGATCGGCCTGGCGCTCCTGCCGCTGGGTATCTGGTCGCGGCTCTCCTGGCTTGCCTATCTGGGCGTTGTCGTTCTTCTG
GTTCTCGTCGACTTTTTCGGCATCATGGGCGGGGGCGCTGCCCGCTGGCTGAAGATCGGTCCCCTGATCATCCAGCCCTC
AGAGCCCGCAAAACTCGCCGTTACGCTTGCCGTTGCCAGCTATTACCAGCGTATGATGCCGCTCAATGGCCGCTCCCTGC
CATTCTGGGTCCACCTTGGCGCGCTCGTGATCATTCTCATTCCCGCCGCCCTTGTCTTCAAACAGCCCAACCTGTCGACC
GCCCTGGCGCTCACCGCGTCGGGCGTGTTCATCGTGTTCTTCGCCGGCATCGGCTATCGCTACGTGATCGGCGCCCTGGT
TGCGGGCGTTGCCGCGATCCCCGCCATCTACACCTTCGTCCTGGAGCCCTACCAGCGAGAGCGCGTCGATACGCTGATCG
CCGGCATCACCGGCCAGACCACCAATGGCCTGGGCGAAAGTTACCAGATCGAGCAGGCCAAGATCGCCATCGGGGCGGGC
GGCTTCAATGGCCGCGGCTATCTCCAGGGCATCCAGTCCCAGCAGGAATATGTGCCCGAACAGCATACGGACTTCATCCT
CACGGTGATTGCCGAGGAGTTCGGCTTCATCGGCTCGGTGGGCCTGCTCACGGTGTTTGGCTTCCTGTTCGTCTGGTCCT
TCCGGGTGGCGGCGCGCAACCGCAGCTGGTTCGGGCGCCTGGCCACCATCGGGGCCACTTCCACCATCGGTTTCTTCACC
ATCTTCAACAGCGGCATGGTGCTGGGCCTGCTGCCGGTGCTGGGCATGCCCCTGCCGCTTATCTCGTATGGCGGCACCGC
GCTGATCACGGTCATGGCCTGTTTCGGGCTCATTCTTTCGGCGCATTTGCACCGCGACGAAAAGCTGACAACCCACCGTG
TTATCTGA

Upstream 100 bases:

>100_bases
GGACGGCTTTACCGGCTTCACGCGCGGCGAAGCCCGTGTGCGCACCGCGTCGTCTTCCTTGCAATTTGCCGAGCTTGGCC
CGTTCAGCAAGCTGGCGCGG

Downstream 100 bases:

>100_bases
CCCGGAATTGCGCCATTTGCGTTGATTTCTGACCGCTTGCCGCTACGGTCCCGCCAAACATTGCCTCTGGGGAGCGTAAT
TCATGGCAGATATTGGTCGC

Product: rod shape-determining protein RodA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPWGIIFLIVGVGLVGVAMLFSVGWDPVAQAPSASEAGLWREQLTRLGIGFVIMIGLALLPLGIWSRLSWLAYLGVVVLL
VLVDFFGIMGGGAARWLKIGPLIIQPSEPAKLAVTLAVASYYQRMMPLNGRSLPFWVHLGALVIILIPAALVFKQPNLST
ALALTASGVFIVFFAGIGYRYVIGALVAGVAAIPAIYTFVLEPYQRERVDTLIAGITGQTTNGLGESYQIEQAKIAIGAG
GFNGRGYLQGIQSQQEYVPEQHTDFILTVIAEEFGFIGSVGLLTVFGFLFVWSFRVAARNRSWFGRLATIGATSTIGFFT
IFNSGMVLGLLPVLGMPLPLISYGGTALITVMACFGLILSAHLHRDEKLTTHRVI

Sequences:

>Translated_375_residues
MPWGIIFLIVGVGLVGVAMLFSVGWDPVAQAPSASEAGLWREQLTRLGIGFVIMIGLALLPLGIWSRLSWLAYLGVVVLL
VLVDFFGIMGGGAARWLKIGPLIIQPSEPAKLAVTLAVASYYQRMMPLNGRSLPFWVHLGALVIILIPAALVFKQPNLST
ALALTASGVFIVFFAGIGYRYVIGALVAGVAAIPAIYTFVLEPYQRERVDTLIAGITGQTTNGLGESYQIEQAKIAIGAG
GFNGRGYLQGIQSQQEYVPEQHTDFILTVIAEEFGFIGSVGLLTVFGFLFVWSFRVAARNRSWFGRLATIGATSTIGFFT
IFNSGMVLGLLPVLGMPLPLISYGGTALITVMACFGLILSAHLHRDEKLTTHRVI
>Mature_374_residues
PWGIIFLIVGVGLVGVAMLFSVGWDPVAQAPSASEAGLWREQLTRLGIGFVIMIGLALLPLGIWSRLSWLAYLGVVVLLV
LVDFFGIMGGGAARWLKIGPLIIQPSEPAKLAVTLAVASYYQRMMPLNGRSLPFWVHLGALVIILIPAALVFKQPNLSTA
LALTASGVFIVFFAGIGYRYVIGALVAGVAAIPAIYTFVLEPYQRERVDTLIAGITGQTTNGLGESYQIEQAKIAIGAGG
FNGRGYLQGIQSQQEYVPEQHTDFILTVIAEEFGFIGSVGLLTVFGFLFVWSFRVAARNRSWFGRLATIGATSTIGFFTI
FNSGMVLGLLPVLGMPLPLISYGGTALITVMACFGLILSAHLHRDEKLTTHRVI

Specific function: This is one of the proteins responsible for the rod shape of the cell. It is required for the expression of the enzymatic activity of PBP2, which is thought to synthesize peptidoglycan in the step of initiation of cell elongation [H]

COG id: COG0772

COG function: function code D; Bacterial cell division membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ftsW/rodA/spoVE family [H]

Homologues:

Organism=Escherichia coli, GI1786853, Length=335, Percent_Identity=40.5970149253731, Blast_Score=224, Evalue=6e-60,
Organism=Escherichia coli, GI1786277, Length=372, Percent_Identity=30.9139784946237, Blast_Score=124, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001182
- InterPro:   IPR018365
- InterPro:   IPR011923 [H]

Pfam domain/function: PF01098 FTSW_RODA_SPOVE [H]

EC number: NA

Molecular weight: Translated: 40305; Mature: 40174

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: PS00428 FTSW_RODA_SPOVE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWGIIFLIVGVGLVGVAMLFSVGWDPVAQAPSASEAGLWREQLTRLGIGFVIMIGLALL
CCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PLGIWSRLSWLAYLGVVVLLVLVDFFGIMGGGAARWLKIGPLIIQPSEPAKLAVTLAVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCEEECCCCCCHHHHHHHHHH
YYQRMMPLNGRSLPFWVHLGALVIILIPAALVFKQPNLSTALALTASGVFIVFFAGIGYR
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHH
YVIGALVAGVAAIPAIYTFVLEPYQRERVDTLIAGITGQTTNGLGESYQIEQAKIAIGAG
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC
GFNGRGYLQGIQSQQEYVPEQHTDFILTVIAEEFGFIGSVGLLTVFGFLFVWSFRVAARN
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
RSWFGRLATIGATSTIGFFTIFNSGMVLGLLPVLGMPLPLISYGGTALITVMACFGLILS
CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
AHLHRDEKLTTHRVI
HHHCCCCCCHHHCCC
>Mature Secondary Structure 
PWGIIFLIVGVGLVGVAMLFSVGWDPVAQAPSASEAGLWREQLTRLGIGFVIMIGLALL
CHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
PLGIWSRLSWLAYLGVVVLLVLVDFFGIMGGGAARWLKIGPLIIQPSEPAKLAVTLAVAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCEEECCCCCCHHHHHHHHHH
YYQRMMPLNGRSLPFWVHLGALVIILIPAALVFKQPNLSTALALTASGVFIVFFAGIGYR
HHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHCHHH
YVIGALVAGVAAIPAIYTFVLEPYQRERVDTLIAGITGQTTNGLGESYQIEQAKIAIGAG
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEECC
GFNGRGYLQGIQSQQEYVPEQHTDFILTVIAEEFGFIGSVGLLTVFGFLFVWSFRVAARN
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCC
RSWFGRLATIGATSTIGFFTIFNSGMVLGLLPVLGMPLPLISYGGTALITVMACFGLILS
CHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHH
AHLHRDEKLTTHRVI
HHHCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]