Click here to switch to the map view.

The map label for this gene is clpS

Identifier: 114332013

GI number: 114332013

Start: 2163006

End: 2163317

Strand: Direct

Name: clpS

Synonym: Neut_2047

Alternate gene names: 114332013

Gene position: 2163006-2163317 (Clockwise)

Preceding gene: 114332011

Following gene: 114332014

Centisome position: 81.28

GC content: 39.74

Gene sequence:

>312_bases
ATGGCAGCAAATAACCGAAATCCTGAAAGTGTTATCGAAAAAGGCAAGACCAGATTGACCCCCCCACCTTTATATAAGGT
AATACTGATTAATGATGATTTTACCCCCATGGATTTCGTGGTAAAGGTGTTGCGCCATTTTTTCTTCATGGATGAAGAAA
TGGCAACCCGAATTATGTTGAAAATTCACACTGAAGGTGCAGGAATATGTGGAACTTATCCTGGCGATATTGCAGCCACA
AAAGTACAACAGGTCAATGAATTCTCAAAACAAAATCAGCATCCACTCATGTGTGTGATGGAGAAGGAATAA

Upstream 100 bases:

>100_bases
GCACCGGAAAGATCGGGTTAGCGGTTAGAATACAGAAGTCAGTACTGATTAAATATTTTTCTTATAAAATACCAGACCCA
GAACATCGAAAACGTAAGCC

Downstream 100 bases:

>100_bases
TATGATTGCGCAAGAATTGGAAGTAAGTTTGCATATGGCTTTCGTCGAGTCACGACAAAAACGTCACGAATTCATTACGG
TTGAACACCTGCTACTGGCT

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 102

Protein sequence:

>103_residues
MAANNRNPESVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIMLKIHTEGAGICGTYPGDIAAT
KVQQVNEFSKQNQHPLMCVMEKE

Sequences:

>Translated_103_residues
MAANNRNPESVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIMLKIHTEGAGICGTYPGDIAAT
KVQQVNEFSKQNQHPLMCVMEKE
>Mature_102_residues
AANNRNPESVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIMLKIHTEGAGICGTYPGDIAATK
VQQVNEFSKQNQHPLMCVMEKE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=90, Percent_Identity=51.1111111111111, Blast_Score=113, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_NITEC (Q0AEG2)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_748235.1
- ProteinModelPortal:   Q0AEG2
- SMR:   Q0AEG2
- STRING:   Q0AEG2
- GeneID:   4273224
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_2047
- NMPDR:   fig|335283.3.peg.2287
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   VFPFGIA
- PhylomeDB:   Q0AEG2
- ProtClustDB:   CLSK585913
- BioCyc:   NEUT335283:NEUT_2047-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11757; Mature: 11626

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
6.8 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAANNRNPESVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIML
CCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHEEEE
KIHTEGAGICGTYPGDIAATKVQQVNEFSKQNQHPLMCVMEKE
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
>Mature Secondary Structure 
AANNRNPESVIEKGKTRLTPPPLYKVILINDDFTPMDFVVKVLRHFFFMDEEMATRIML
CCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHEEEE
KIHTEGAGICGTYPGDIAATKVQQVNEFSKQNQHPLMCVMEKE
EEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA