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The map label for this gene is rpoZ

Identifier: 114330628

GI number: 114330628

Start: 624150

End: 624353

Strand: Reverse

Name: rpoZ

Synonym: Neut_0613

Alternate gene names: 114330628

Gene position: 624353-624150 (Counterclockwise)

Preceding gene: 114330629

Following gene: 114330627

Centisome position: 23.46

GC content: 46.08

Gene sequence:

>204_bases
ATGGCACGCATTACCGTAGAAGATTGTCTGAAAGTGATCCCGAACCGTTTTAATATGACACTGGCAGCGACCGTGCGGGC
AAGGCAGATATCAGTTGGTTCCACGCCAATGATTGATGCCGGACGCGACAAGCCGATCGTTATTGCCTTGCGCGAGCTAG
CACAAAAAAAATACAACGAAAACATACTTAATACAATACGTTAA

Upstream 100 bases:

>100_bases
CAATCCGTCAGCTTGTCAGGCAGCGCGCTCTGCTTGCTGAATTTTCCTGATCAGCCTTACGTTTTTACATTTTTGTAAAT
TTTTACTGGAGTTATCCATC

Downstream 100 bases:

>100_bases
TCAGGCAGCACGATATCCACCAGCGGATACTGCTGTAACCTGCCTCATAGCTCCCCGCTCCCCGCCACATACACATACAA
ATAAAATCGGTACTACCTGA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 67; Mature: 66

Protein sequence:

>67_residues
MARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNENILNTIR

Sequences:

>Translated_67_residues
MARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNENILNTIR
>Mature_66_residues
ARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNENILNTIR

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_NITEC (Q0AD35)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746850.1
- ProteinModelPortal:   Q0AD35
- SMR:   Q0AD35
- STRING:   Q0AD35
- GeneID:   4272507
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0613
- NMPDR:   fig|335283.3.peg.1486
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   NRFLLVM
- ProtClustDB:   PRK00392
- BioCyc:   NEUT335283:NEUT_0613-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7540; Mature: 7409

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNE
CCEECHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
NILNTIR
HHHHHCC
>Mature Secondary Structure 
ARITVEDCLKVIPNRFNMTLAATVRARQISVGSTPMIDAGRDKPIVIALRELAQKKYNE
CEECHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
NILNTIR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA