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The map label for this gene is ybiX [C]

Identifier: 114330396

GI number: 114330396

Start: 374722

End: 375405

Strand: Reverse

Name: ybiX [C]

Synonym: Neut_0373

Alternate gene names: 114330396

Gene position: 375405-374722 (Counterclockwise)

Preceding gene: 114330397

Following gene: 114330395

Centisome position: 14.11

GC content: 52.63

Gene sequence:

>684_bases
GTGCTGCTGACGATCGACAATGTATTAACTGAAGAGGAGCTCGCAGCAGCAAGCAGTCTGTTAGCTGAATCTGCCTGGGT
GAGCGGCCTGGTAACCGCCGGCGCCCAGGCGGCCAAAGTCAAAAACAATCAGCAACTGCCGGAAGATTCCCCGCAAATGG
CAGCGCTGCGCGGACTGGTATTAGGGGCGTTGAACCGTAATGCCCTGTTCTTCACGGCAACTCTGCCAAAGAAAATCATG
CCGCCATTTTTCAACCGCTACAGCGGAAAAACCAATCATTATGGCTTTCACGTGGACAATGCCATGCGTATGTTGCCAGA
TGGCGTCGGCTACGTGCGCGCGGATGTATCCGCCACCCTGTTCCTGTCCAACCCACAAACCTACGATGGTGGTGAATTGG
TCATTAACGATACCTTTGGTCAACAAAGCGTGAAACTGCAGGCGGGAAGTATGGTGATATACCCTTCTTCTTCTGTTCAT
CAGGTAACGCCAGTAACACACGGAGAACGGATCGCCTGTTTCATGTTCATCCAAAGTATGGTGCGCGATCCCAATCAACG
CCGCCTGCTATATGAAATGGATATGGCATTGCTGCAATTGCGCCAGAATATAGGCGAAACTGAAGCTGTTGTCAGCCTGA
CGGGCACCTACCATAACCTGCTGCGGCAGTGGGCGGAGAGTTGA

Upstream 100 bases:

>100_bases
CTATGACAACGGCCCATTTACTATCCCTGGCCAGCGTCGCAGAGTTATCATGACAGCCGAATACAAATTCTGATTTAGTC
CTAACCGAAAATATAATCAA

Downstream 100 bases:

>100_bases
AAAATAATACGCTAACTGGATTGCTTCAATCCTGTGGATTTTCGCAACGATGGGCGAATCACCGCAACCTGATGACCGCA
TGATGACAAAATAAGTCAGC

Product: putative hydroxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MLLTIDNVLTEEELAAASSLLAESAWVSGLVTAGAQAAKVKNNQQLPEDSPQMAALRGLVLGALNRNALFFTATLPKKIM
PPFFNRYSGKTNHYGFHVDNAMRMLPDGVGYVRADVSATLFLSNPQTYDGGELVINDTFGQQSVKLQAGSMVIYPSSSVH
QVTPVTHGERIACFMFIQSMVRDPNQRRLLYEMDMALLQLRQNIGETEAVVSLTGTYHNLLRQWAES

Sequences:

>Translated_227_residues
MLLTIDNVLTEEELAAASSLLAESAWVSGLVTAGAQAAKVKNNQQLPEDSPQMAALRGLVLGALNRNALFFTATLPKKIM
PPFFNRYSGKTNHYGFHVDNAMRMLPDGVGYVRADVSATLFLSNPQTYDGGELVINDTFGQQSVKLQAGSMVIYPSSSVH
QVTPVTHGERIACFMFIQSMVRDPNQRRLLYEMDMALLQLRQNIGETEAVVSLTGTYHNLLRQWAES
>Mature_227_residues
MLLTIDNVLTEEELAAASSLLAESAWVSGLVTAGAQAAKVKNNQQLPEDSPQMAALRGLVLGALNRNALFFTATLPKKIM
PPFFNRYSGKTNHYGFHVDNAMRMLPDGVGYVRADVSATLFLSNPQTYDGGELVINDTFGQQSVKLQAGSMVIYPSSSVH
QVTPVTHGERIACFMFIQSMVRDPNQRRLLYEMDMALLQLRQNIGETEAVVSLTGTYHNLLRQWAES

Specific function: Unknown

COG id: COG3128

COG function: function code S; Uncharacterized iron-regulated protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe2OG dioxygenase domain

Homologues:

Organism=Escherichia coli, GI87081784, Length=226, Percent_Identity=53.5398230088496, Blast_Score=247, Evalue=4e-67,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y373_NITEC (Q0AJ18)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746618.1
- ProteinModelPortal:   Q0AJ18
- SMR:   Q0AJ18
- STRING:   Q0AJ18
- GeneID:   4273484
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0373
- NMPDR:   fig|335283.3.peg.713
- eggNOG:   COG3128
- HOGENOM:   HBG285605
- OMA:   ADWADGK
- PhylomeDB:   Q0AJ18
- ProtClustDB:   PRK05467
- BioCyc:   NEUT335283:NEUT_0373-MONOMER
- HAMAP:   MF_00657
- InterPro:   IPR005123
- InterPro:   IPR006620
- SMART:   SM00702

Pfam domain/function: PF03171 2OG-FeII_Oxy

EC number: 1.14.11.- [C]

Molecular weight: Translated: 25010; Mature: 25010

Theoretical pI: Translated: 6.35; Mature: 6.35

Prosite motif: PS51471 FE2OG_OXY

Important sites: BINDING 170-170

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLTIDNVLTEEELAAASSLLAESAWVSGLVTAGAQAAKVKNNQQLPEDSPQMAALRGLV
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHH
LGALNRNALFFTATLPKKIMPPFFNRYSGKTNHYGFHVDNAMRMLPDGVGYVRADVSATL
HHHCCCCEEEEEECCCHHHCCHHHHHCCCCCCCCCEEECHHHHHCCCCCCEEEECCEEEE
FLSNPQTYDGGELVINDTFGQQSVKLQAGSMVIYPSSSVHQVTPVTHGERIACFMFIQSM
EECCCCCCCCCEEEEECCCCCCEEEEEECCEEEECCCCCEEECCCCCCCHHHHHHHHHHH
VRDPNQRRLLYEMDMALLQLRQNIGETEAVVSLTGTYHNLLRQWAES
HCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCC
>Mature Secondary Structure
MLLTIDNVLTEEELAAASSLLAESAWVSGLVTAGAQAAKVKNNQQLPEDSPQMAALRGLV
CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHH
LGALNRNALFFTATLPKKIMPPFFNRYSGKTNHYGFHVDNAMRMLPDGVGYVRADVSATL
HHHCCCCEEEEEECCCHHHCCHHHHHCCCCCCCCCEEECHHHHHCCCCCCEEEECCEEEE
FLSNPQTYDGGELVINDTFGQQSVKLQAGSMVIYPSSSVHQVTPVTHGERIACFMFIQSM
EECCCCCCCCCEEEEECCCCCCEEEEEECCEEEECCCCCEEECCCCCCCHHHHHHHHHHH
VRDPNQRRLLYEMDMALLQLRQNIGETEAVVSLTGTYHNLLRQWAES
HCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA