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The map label for this gene is ccmF [H]

Identifier: 114330090

GI number: 114330090

Start: 58689

End: 60650

Strand: Reverse

Name: ccmF [H]

Synonym: Neut_0059

Alternate gene names: 114330090

Gene position: 60650-58689 (Counterclockwise)

Preceding gene: 114330091

Following gene: 114330089

Centisome position: 2.28

GC content: 56.37

Gene sequence:

>1962_bases
ATGATTGCTGAACTCGGTCATTTTTCACTGATTCTGACGCTATTCGTGGCGCTTGCGCAGGGCTGTTTAGCCCTCGCCGG
CGCGGCGCGTGACAATGCTGTCTGGATCGCCTTTGCTCGACCCGCCGCGCGCGCGCAGTTTCTTTTAATTATTTTCAGCT
TTGCGACGCTGGGTTGGTCCTTCATCGTTAAGGATTTTTCGGTGGCTTACGTCGCCCAGAATTCCAACTCGCAACTGCCC
TTGCTGTACCGTATCGCCGCCGTCTGGGGTGGTCACGAGGGATCGCTCTTGCTGTGGCTACTGATGCAAACAGGCTGGGC
ATATGCAGTAAGTGTGTTCTCAAAGCAGCTGCCCGATGTCATGGTGGCACGCGTCTTGGGGGTGTTGGGCCTGGTCACCG
CTGGATTCCTGCTCTTTGTGCTGCTTACCTCTAACCCGTTCGAGCGCCTGGTACCTGCACCCATAGAGGGTATGGACCTG
AATCCGCTACTGCAAGACATCGGACTGATATTTCATCCGCCACTGCTGTACATGGGCTATGTCGGATTTTCGGTAGCATT
CGCGTTTGCCATTGCCGCACTGCTGGCGGGGCAGCTCGATTCGACATGGGCACGTTGGTCTCGGCCCTGGGCGACGGCAG
CGTGGCTGTTCCTGACCTTGGGTATCGCCTTGGGAAGTTGGTGGGCCTATTACGAACTGGGTTGGGGCGGCTGGTGGTTC
TGGGATCCGGTAGAGAACTCTTCGTTTATTCCTTGGCTGGTGGGTACCGCGTTGATCCACTCCCTGGCGGTGACTGAAAA
GCGTGCCAGCTTCAAGAACTGGACGGTGCTGCTTGCTATCAGTACGTTCTCGCTTTCATTACTAGGGGCTTTTCTTGTAC
GGTCTGGCGTGCTGACGTCAGTACACGCCTTCGCCACCGATCCGCGCCGAGGCGTATTCATTTTGATGCTATTCGCCGTG
GTGGTGGGCTCGTCCTTGTTTTTATTTGCACTGCGCGCACCCAAGGTGGGCATGGGCGGGCGGTTTGAACTGATATCGCG
TGAATCTCTCTTGCTGGTGAACAACGTATTGTTGGCCGTAGCAGCAGGGGCCGTCATTCTCGGAACCTTGTATCCGCTTT
TCATTGATGCGCTCGGGTTAGGCAAACTTTCCGTGGGGCCGCCATACTTTAATGCCGTTTTCATACCGCTGATGGTGCCG
GCGCTGCTTCTCATGGCGGTAGGTCCGGTGGCTAACTGGAAGTCGGCCAAGATAAGCGCTCTGATGAAACACCTTCATGT
TCCGGCTGTAGTGGCGCTTGTGGTCGGTGTTGGCGCACCGTTCTTGCTGGGGCGTTGGTCGGCGCTGGTGGCGTTAGGTC
TGGCACTGGCCACGTGGATTGCCACTGCGGTGGTTAAGGGCATCGTTGACCGTATGCGGGCTACGCGCACTGGGCTGCGA
GCCCAACCGCGTAGCTGGCTAGGCATGCATCTGGCCCATTTAGGTATTGCCGTGTTCGTGGCTGGCGTGACGCTCGTCAT
GGGCTATGAAACTGAACAGGACGTTCGTATGACGCCCGGCAGCACGGTAAGCACAGGGGGCTATGACTTGAAGTTTCTAG
GCGTCAATAAAGCACAGGGACCTAATTATGTTGCAGACATCGGTGACATCGAGCTGTCACGCGATGGTCGGGTCTTACGT
TTGCTTCATCCCGAAAAACGTAGCTACATCTCCTCGGAAATGCCCATGACAGAAGCAGCCATTGACGCCAACGGCTTGCG
TCATGTGTACGTCGCCTTGGGTGAGCCGCTCGCCGACAGCGCCTGGAGCGTGCGTGTTTACTACAAACCATTCGTTGATT
GGATCTGGATTGGTTGCATTTTGATGGCGCTGGGTGGGTTGTTAGCTATTAGTGATCGTCGTTATCGACTTAAGCGCCGC
GAACGTAAGGCTGCTTTGGTCGCAGCAGGAGCCACAGCATGA

Upstream 100 bases:

>100_bases
AGGTGCTTGCCAAACACGATGAGAACTATATGCCCCCTGAAGTGCAGCATGCGCTGGATGAGGCCGCCAAGAACACGATT
ACTGCGAGGCCATAACGCTC

Downstream 100 bases:

>100_bases
GCCGCTTTGTATGGCCGTTGGTCGGCTTTATCGTACTCGTTGGCTTCCTGGCTTTCGGTTTGACCCTCAAGCCCAGCGAA
GTCCCTTCGCCTTTTATTAA

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 653; Mature: 653

Protein sequence:

>653_residues
MIAELGHFSLILTLFVALAQGCLALAGAARDNAVWIAFARPAARAQFLLIIFSFATLGWSFIVKDFSVAYVAQNSNSQLP
LLYRIAAVWGGHEGSLLLWLLMQTGWAYAVSVFSKQLPDVMVARVLGVLGLVTAGFLLFVLLTSNPFERLVPAPIEGMDL
NPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIAALLAGQLDSTWARWSRPWATAAWLFLTLGIALGSWWAYYELGWGGWWF
WDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSLSLLGAFLVRSGVLTSVHAFATDPRRGVFILMLFAV
VVGSSLFLFALRAPKVGMGGRFELISRESLLLVNNVLLAVAAGAVILGTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVP
ALLLMAVGPVANWKSAKISALMKHLHVPAVVALVVGVGAPFLLGRWSALVALGLALATWIATAVVKGIVDRMRATRTGLR
AQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVSTGGYDLKFLGVNKAQGPNYVADIGDIELSRDGRVLR
LLHPEKRSYISSEMPMTEAAIDANGLRHVYVALGEPLADSAWSVRVYYKPFVDWIWIGCILMALGGLLAISDRRYRLKRR
ERKAALVAAGATA

Sequences:

>Translated_653_residues
MIAELGHFSLILTLFVALAQGCLALAGAARDNAVWIAFARPAARAQFLLIIFSFATLGWSFIVKDFSVAYVAQNSNSQLP
LLYRIAAVWGGHEGSLLLWLLMQTGWAYAVSVFSKQLPDVMVARVLGVLGLVTAGFLLFVLLTSNPFERLVPAPIEGMDL
NPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIAALLAGQLDSTWARWSRPWATAAWLFLTLGIALGSWWAYYELGWGGWWF
WDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSLSLLGAFLVRSGVLTSVHAFATDPRRGVFILMLFAV
VVGSSLFLFALRAPKVGMGGRFELISRESLLLVNNVLLAVAAGAVILGTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVP
ALLLMAVGPVANWKSAKISALMKHLHVPAVVALVVGVGAPFLLGRWSALVALGLALATWIATAVVKGIVDRMRATRTGLR
AQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVSTGGYDLKFLGVNKAQGPNYVADIGDIELSRDGRVLR
LLHPEKRSYISSEMPMTEAAIDANGLRHVYVALGEPLADSAWSVRVYYKPFVDWIWIGCILMALGGLLAISDRRYRLKRR
ERKAALVAAGATA
>Mature_653_residues
MIAELGHFSLILTLFVALAQGCLALAGAARDNAVWIAFARPAARAQFLLIIFSFATLGWSFIVKDFSVAYVAQNSNSQLP
LLYRIAAVWGGHEGSLLLWLLMQTGWAYAVSVFSKQLPDVMVARVLGVLGLVTAGFLLFVLLTSNPFERLVPAPIEGMDL
NPLLQDIGLIFHPPLLYMGYVGFSVAFAFAIAALLAGQLDSTWARWSRPWATAAWLFLTLGIALGSWWAYYELGWGGWWF
WDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSLSLLGAFLVRSGVLTSVHAFATDPRRGVFILMLFAV
VVGSSLFLFALRAPKVGMGGRFELISRESLLLVNNVLLAVAAGAVILGTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVP
ALLLMAVGPVANWKSAKISALMKHLHVPAVVALVVGVGAPFLLGRWSALVALGLALATWIATAVVKGIVDRMRATRTGLR
AQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVSTGGYDLKFLGVNKAQGPNYVADIGDIELSRDGRVLR
LLHPEKRSYISSEMPMTEAAIDANGLRHVYVALGEPLADSAWSVRVYYKPFVDWIWIGCILMALGGLLAISDRRYRLKRR
ERKAALVAAGATA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=648, Percent_Identity=54.6296296296296, Blast_Score=629, Evalue=0.0,
Organism=Escherichia coli, GI1790511, Length=589, Percent_Identity=38.3701188455008, Blast_Score=311, Evalue=1e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 70841; Mature: 70841

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAELGHFSLILTLFVALAQGCLALAGAARDNAVWIAFARPAARAQFLLIIFSFATLGWS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
FIVKDFSVAYVAQNSNSQLPLLYRIAAVWGGHEGSLLLWLLMQTGWAYAVSVFSKQLPDV
HHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHH
MVARVLGVLGLVTAGFLLFVLLTSNPFERLVPAPIEGMDLNPLLQDIGLIFHPPLLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHCHHHHCCHHHHHHH
VGFSVAFAFAIAALLAGQLDSTWARWSRPWATAAWLFLTLGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSLSLLGAFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
VHAFATDPRRGVFILMLFAVVVGSSLFLFALRAPKVGMGGRFELISRESLLLVNNVLLAV
HHHHCCCCCCHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
AAGAVILGTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVPALLLMAVGPVANWKSAKISA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LMKHLHVPAVVALVVGVGAPFLLGRWSALVALGLALATWIATAVVKGIVDRMRATRTGLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVSTGGYDLKFLGVNKAQG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEEEECCCCCC
PNYVADIGDIELSRDGRVLRLLHPEKRSYISSEMPMTEAAIDANGLRHVYVALGEPLADS
CCCEEECCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCC
AWSVRVYYKPFVDWIWIGCILMALGGLLAISDRRYRLKRRERKAALVAAGATA
CEEEEEEEHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHEEECCCCC
>Mature Secondary Structure
MIAELGHFSLILTLFVALAQGCLALAGAARDNAVWIAFARPAARAQFLLIIFSFATLGWS
CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHH
FIVKDFSVAYVAQNSNSQLPLLYRIAAVWGGHEGSLLLWLLMQTGWAYAVSVFSKQLPDV
HHHHHHEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHHCHHH
MVARVLGVLGLVTAGFLLFVLLTSNPFERLVPAPIEGMDLNPLLQDIGLIFHPPLLYMGY
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCHHHHHCHHHHCCHHHHHHH
VGFSVAFAFAIAALLAGQLDSTWARWSRPWATAAWLFLTLGIALGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHEEEECCCCEEE
WDPVENSSFIPWLVGTALIHSLAVTEKRASFKNWTVLLAISTFSLSLLGAFLVRSGVLTS
ECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHH
VHAFATDPRRGVFILMLFAVVVGSSLFLFALRAPKVGMGGRFELISRESLLLVNNVLLAV
HHHHCCCCCCHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCEEEECCCCHHHHHHHHHHH
AAGAVILGTLYPLFIDALGLGKLSVGPPYFNAVFIPLMVPALLLMAVGPVANWKSAKISA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
LMKHLHVPAVVALVVGVGAPFLLGRWSALVALGLALATWIATAVVKGIVDRMRATRTGLR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
AQPRSWLGMHLAHLGIAVFVAGVTLVMGYETEQDVRMTPGSTVSTGGYDLKFLGVNKAQG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCCEEECCCEEEEEEECCCCCC
PNYVADIGDIELSRDGRVLRLLHPEKRSYISSEMPMTEAAIDANGLRHVYVALGEPLADS
CCCEEECCCEEECCCCCEEEEECCHHHHHHHCCCCCHHHHHCCCCCEEEEEEECCCCCCC
AWSVRVYYKPFVDWIWIGCILMALGGLLAISDRRYRLKRRERKAALVAAGATA
CEEEEEEEHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]