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The map label for this gene is ccmH [H]

Identifier: 114330088

GI number: 114330088

Start: 57722

End: 58171

Strand: Reverse

Name: ccmH [H]

Synonym: Neut_0057

Alternate gene names: 114330088

Gene position: 58171-57722 (Counterclockwise)

Preceding gene: 114330089

Following gene: 114330087

Centisome position: 2.19

GC content: 56.44

Gene sequence:

>450_bases
ATGAAACGTTGGTGGCTGACATTATTGTGCGCGGTCATCGCCTTGCCATCGTGGGCGGATAACGGCGCGGCGGAAAAGCG
CATGTTGGATATTGCTGGCGAGCTGCGCTGCCTGGTGTGCCAGAACGAGTCTATTGCGGCGTCACGCGCCGACCTGGCCG
TGGATTTGCGTCAGCAGATACGCGAACAGATTCAAGTGGGCAAAAGCGATGCCGAGATTAGAGCCTATATGGTTGATCGC
TATGGTGATTTCGTACTCTATCGCACGCCATTAAAAGCCACCACGCTATTGCTATGGTTTGGCCCCATGTTGCTGCTGGC
CTTTGGGCTCCTCGTTCTGGCGACCACATTGCGTCGCCGGAAAAGCAGTGTGGCTGACGCATTGTTAAGCGACGATGAGC
GCAAGAGGGCGCAGGCGCTGCTGGCGCAAACCACGGACAACGGAACATAA

Upstream 100 bases:

>100_bases
TTATCGATAAGGACGGCTTCATTCGTTACAAGCATATCGGTGCAGTAACCGATAGTGCGGTACGCGACACGATACTACCG
CTGATACGGGAGCTTGAGCA

Downstream 100 bases:

>100_bases
CCATGAATTTGATTTTTATCCTAATTGCTGCATTACTTGCTTCTGGTGTCACCTTGTGGCTCGGGCTTGCTCTGTGGCGT
GGCCCCAAGCTGAATAGCAG

Product: cytochrome C biogenesis protein

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycL [H]

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKRWWLTLLCAVIALPSWADNGAAEKRMLDIAGELRCLVCQNESIAASRADLAVDLRQQIREQIQVGKSDAEIRAYMVDR
YGDFVLYRTPLKATTLLLWFGPMLLLAFGLLVLATTLRRRKSSVADALLSDDERKRAQALLAQTTDNGT

Sequences:

>Translated_149_residues
MKRWWLTLLCAVIALPSWADNGAAEKRMLDIAGELRCLVCQNESIAASRADLAVDLRQQIREQIQVGKSDAEIRAYMVDR
YGDFVLYRTPLKATTLLLWFGPMLLLAFGLLVLATTLRRRKSSVADALLSDDERKRAQALLAQTTDNGT
>Mature_149_residues
MKRWWLTLLCAVIALPSWADNGAAEKRMLDIAGELRCLVCQNESIAASRADLAVDLRQQIREQIQVGKSDAEIRAYMVDR
YGDFVLYRTPLKATTLLLWFGPMLLLAFGLLVLATTLRRRKSSVADALLSDDERKRAQALLAQTTDNGT

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG3088

COG function: function code O; Uncharacterized protein involved in biosynthesis of c-type cytochromes

Gene ontology:

Cell location: Membrane; Single-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmH/CycL/Ccl2/NrfF family [H]

Homologues:

Organism=Escherichia coli, GI1788522, Length=87, Percent_Identity=48.2758620689655, Blast_Score=86, Evalue=8e-19,
Organism=Escherichia coli, GI1790512, Length=67, Percent_Identity=44.7761194029851, Blast_Score=70, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005616 [H]

Pfam domain/function: PF03918 CcmH [H]

EC number: NA

Molecular weight: Translated: 16697; Mature: 16697

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRWWLTLLCAVIALPSWADNGAAEKRMLDIAGELRCLVCQNESIAASRADLAVDLRQQI
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHH
REQIQVGKSDAEIRAYMVDRYGDFVLYRTPLKATTLLLWFGPMLLLAFGLLVLATTLRRR
HHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSSVADALLSDDERKRAQALLAQTTDNGT
HHHHHHHHHCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKRWWLTLLCAVIALPSWADNGAAEKRMLDIAGELRCLVCQNESIAASRADLAVDLRQQI
CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHH
REQIQVGKSDAEIRAYMVDRYGDFVLYRTPLKATTLLLWFGPMLLLAFGLLVLATTLRRR
HHHHHCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSSVADALLSDDERKRAQALLAQTTDNGT
HHHHHHHHHCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA