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The map label for this gene is cycH [H]

Identifier: 114330087

GI number: 114330087

Start: 56862

End: 57719

Strand: Reverse

Name: cycH [H]

Synonym: Neut_0056

Alternate gene names: 114330087

Gene position: 57719-56862 (Counterclockwise)

Preceding gene: 114330088

Following gene: 114330086

Centisome position: 2.17

GC content: 58.51

Gene sequence:

>858_bases
ATGAATTTGATTTTTATCCTAATTGCTGCATTACTTGCTTCTGGTGTCACCTTGTGGCTCGGGCTTGCTCTGTGGCGTGG
CCCCAAGCTGAATAGCAGTATCGAGCATCACGCCGTCAATGCGACGGTGCTGCGCGACCAATTGGCTGAGCTGGAGCAGG
ACCGTGCTAACGGTATATTGTCTTCGCATGATCACGCTGTGGCCCAACAAGAGCTCCAACGACGTGTGCTCGATGAAGCA
ACGCCGGCCCAGAGTACTGGGCTACGGCGCCAGAGCAGCAAGCAAGCTGCGATGGCGCTGGCCATCGTCCTGCCAGTAGC
GGCAACGCTTACCTATCTGTCGATAGGGAATCCTGCAGCGATCACGCCACCGCCGGCGCGAAGTGCTCCTGCCATGACAC
AAGCCGATGTGCAGGCCATGGTGGATTCGCTCGCGGCGAGGCTGGCGCGCAATCCTGATGACGCGCCTGGCTGGCTGATG
CTGGCGCGCTCTTATCGCTATTTTGAAAAGTATGAAGATGCTGCCGCAGCTTTTTCTAAAGCGGCTAGCGTCATCCAGAC
GGATCCTTTGGCGCTGTCGGAATATGCCGAAACACTCGCCAGAAGCAGCCCCGCAGGATTTAAAGGGGAGCCGACGCAAT
TGCTGGAGCGCGCGCTATCGCTTAATCCTCGGGAACCATTCGCTCTGACCTTGGCGGGCGCCGCAGCACGTGAGCGCCAA
GACTATCCGGTAGCTATCGATTACTGGCAACAGTTACTCGGACTGCTTCCAGCTGATTCGGACGCCGCGCAGGCCGTCGC
AGACACGATAGAGCGGGCTCGCCGAGAACAAGCCGAAACGGCGACCGCCAAGAACTGA

Upstream 100 bases:

>100_bases
GTCGCCGGAAAAGCAGTGTGGCTGACGCATTGTTAAGCGACGATGAGCGCAAGAGGGCGCAGGCGCTGCTGGCGCAAACC
ACGGACAACGGAACATAACC

Downstream 100 bases:

>100_bases
TGGGTGCTGAACATTAACAATGAAGAACTCTTTTAAGATAATTGCATGGGCGGCGATGGCGTTAATTTGTGTGATCGCCA
TCGCGACAGCTTTATTTTTT

Product: tetratricopeptide domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 285

Protein sequence:

>285_residues
MNLIFILIAALLASGVTLWLGLALWRGPKLNSSIEHHAVNATVLRDQLAELEQDRANGILSSHDHAVAQQELQRRVLDEA
TPAQSTGLRRQSSKQAAMALAIVLPVAATLTYLSIGNPAAITPPPARSAPAMTQADVQAMVDSLAARLARNPDDAPGWLM
LARSYRYFEKYEDAAAAFSKAASVIQTDPLALSEYAETLARSSPAGFKGEPTQLLERALSLNPREPFALTLAGAAARERQ
DYPVAIDYWQQLLGLLPADSDAAQAVADTIERARREQAETATAKN

Sequences:

>Translated_285_residues
MNLIFILIAALLASGVTLWLGLALWRGPKLNSSIEHHAVNATVLRDQLAELEQDRANGILSSHDHAVAQQELQRRVLDEA
TPAQSTGLRRQSSKQAAMALAIVLPVAATLTYLSIGNPAAITPPPARSAPAMTQADVQAMVDSLAARLARNPDDAPGWLM
LARSYRYFEKYEDAAAAFSKAASVIQTDPLALSEYAETLARSSPAGFKGEPTQLLERALSLNPREPFALTLAGAAARERQ
DYPVAIDYWQQLLGLLPADSDAAQAVADTIERARREQAETATAKN
>Mature_285_residues
MNLIFILIAALLASGVTLWLGLALWRGPKLNSSIEHHAVNATVLRDQLAELEQDRANGILSSHDHAVAQQELQRRVLDEA
TPAQSTGLRRQSSKQAAMALAIVLPVAATLTYLSIGNPAAITPPPARSAPAMTQADVQAMVDSLAARLARNPDDAPGWLM
LARSYRYFEKYEDAAAAFSKAASVIQTDPLALSEYAETLARSSPAGFKGEPTQLLERALSLNPREPFALTLAGAAARERQ
DYPVAIDYWQQLLGLLPADSDAAQAVADTIERARREQAETATAKN

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30673; Mature: 30673

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLIFILIAALLASGVTLWLGLALWRGPKLNSSIEHHAVNATVLRDQLAELEQDRANGIL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSHDHAVAQQELQRRVLDEATPAQSTGLRRQSSKQAAMALAIVLPVAATLTYLSIGNPAA
CCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ITPPPARSAPAMTQADVQAMVDSLAARLARNPDDAPGWLMLARSYRYFEKYEDAAAAFSK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AASVIQTDPLALSEYAETLARSSPAGFKGEPTQLLERALSLNPREPFALTLAGAAARERQ
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHCC
DYPVAIDYWQQLLGLLPADSDAAQAVADTIERARREQAETATAKN
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNLIFILIAALLASGVTLWLGLALWRGPKLNSSIEHHAVNATVLRDQLAELEQDRANGIL
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
SSHDHAVAQQELQRRVLDEATPAQSTGLRRQSSKQAAMALAIVLPVAATLTYLSIGNPAA
CCCHHHHHHHHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
ITPPPARSAPAMTQADVQAMVDSLAARLARNPDDAPGWLMLARSYRYFEKYEDAAAAFSK
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
AASVIQTDPLALSEYAETLARSSPAGFKGEPTQLLERALSLNPREPFALTLAGAAARERQ
HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCEEEEECCHHHHHCC
DYPVAIDYWQQLLGLLPADSDAAQAVADTIERARREQAETATAKN
CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]