Click here to switch to the map view.

The map label for this gene is yfiA [C]

Identifier: 113969494

GI number: 113969494

Start: 1353246

End: 1353602

Strand: Direct

Name: yfiA [C]

Synonym: Shewmr4_1150

Alternate gene names: 113969494

Gene position: 1353246-1353602 (Clockwise)

Preceding gene: 113969493

Following gene: 113969497

Centisome position: 28.75

GC content: 44.26

Gene sequence:

>357_bases
ATGAAAATTAATCTTTCTGGTCACCATGTCGATGTTACTGATTCTGTAAAAGAACACGTTAACGAAAAGTTTTCAAAAAT
CGCCACTCATTTCCCCACACTCATCGGCCTCGATATTATTATTGCGAAGGAGCATGGCGAGTTTCAGGTTGAAATTCGGA
CAAATTACGAAGGTAGTCGCATCTCAGCTTCGGGTACGGATGAAGTCATGTATCCCGCGATTGCCGCAGCAGCTAAAAAA
CTGGATGCTGCACTTAAACATCGCAAAGGCCAGTTAAAGGCGGACTTACATGAAAAGCCAACCTGCACAACGCCACCTAT
CGCCCATGAAATTATCCAAGAGATGGATTTGCGCTAG

Upstream 100 bases:

>100_bases
TGGCTCGAAATATTTGCCTAGGGGGCTTGTGTTTTATTTGCCATGCCCCAAGCTCTAATAGTGAAGTGAAAAAAAGTAAA
GACACTAAAAGGGACAATCT

Downstream 100 bases:

>100_bases
GTTATTACCTTAACGATGCAATAAAAAAGGGCCAACTGGCCCTTTTTTATTGGCTGTGTGACACGTCCTAAATCAAATGG
TAAAGCCATAATATTTAGAG

Product: sigma 54 modulation protein / SSU ribosomal protein S30P

Products: NA

Alternate protein names: ORF107 [H]

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPTLIGLDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIAAAAKK
LDAALKHRKGQLKADLHEKPTCTTPPIAHEIIQEMDLR

Sequences:

>Translated_118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPTLIGLDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIAAAAKK
LDAALKHRKGQLKADLHEKPTCTTPPIAHEIIQEMDLR
>Mature_118_residues
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPTLIGLDIIIAKEHGEFQVEIRTNYEGSRISASGTDEVMYPAIAAAAKK
LDAALKHRKGQLKADLHEKPTCTTPPIAHEIIQEMDLR

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 13108; Mature: 13108

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPTLIGLDIIIAKEHGEFQVEIRTNYEGSR
CEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCE
ISASGTDEVMYPAIAAAAKKLDAALKHRKGQLKADLHEKPTCTTPPIAHEIIQEMDLR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKINLSGHHVDVTDSVKEHVNEKFSKIATHFPTLIGLDIIIAKEHGEFQVEIRTNYEGSR
CEECCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCEEEEEEECCCCCE
ISASGTDEVMYPAIAAAAKKLDAALKHRKGQLKADLHEKPTCTTPPIAHEIIQEMDLR
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2695747; 3481423 [H]