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The map label for this gene is yecD [C]

Identifier: 113969497

GI number: 113969497

Start: 1355962

End: 1356507

Strand: Direct

Name: yecD [C]

Synonym: Shewmr4_1153

Alternate gene names: 113969497

Gene position: 1355962-1356507 (Clockwise)

Preceding gene: 113969494

Following gene: 113969499

Centisome position: 28.81

GC content: 49.45

Gene sequence:

>546_bases
ATGGATAACATGAGCTTGCCTAAAACTGCGCTGTTAATAATTGATATGCAGCAGGGGCTGTTTTACGCCGATGCGCCGCC
CTTTAATCGGGAACAGGTGCTAAATAATATCAATCTCTTAATTGCTAAAGCCCGTGAGGCCGGGGCACCGATTTGGGCGG
TTCGCCATACGGGGCCAGAAGGTTCCCCCATTGCCGCCGGAACGGCAAATTGGCAATTGATAGAATCCTTAGCGATTAAT
CCACAGCTGGATAATATCTTTGATAAAACCAAGCCAAGTTGTTTTTATCAAACCGGATTAGCAGAGGCGTTAGCCCATGA
GGGGGTCAGCGAGCTGGTGATAGTGGGGATGAAAACCCAGTATTGTATCGATACCAATTGTCGGATTGCGGCTGTACTTG
GCTGGCAGGTGGTGTTAGCCGATGATGCGCATACTTGTATGGATACGGCGCAGCTCTCGGCAGAGGCGATTATTGCTCAC
CATAATGCCACGCTCCAAGGCGCCTTTGTGCGTTTAGCCAAGAGTGCGGATATCGTATTTCGTTAA

Upstream 100 bases:

>100_bases
GTGCGTAGCGATTTGTGCTTCAAAAAATCGATTACTCAACCCCGCCCAAAGTGGCGGGGTTGTTTTTTCCGTCTTTTGGG
CAATAACGCTGGAGAATGTG

Downstream 100 bases:

>100_bases
TATCCGCAAACAAAAACGCAGCCATTAGGCTGCGTTTTTTGATATCAGAATCAACTTATTCTTGAATGTCTGCATTGTGA
TACACGTTTTGCACGTCGTC

Product: isochorismatase hydrolase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase; Amidase; Hydrolase; Hydrolase Isochorismatase Family; Acetyltransferase GNAT Family; Isochorismatase/Nicotamidase Family Hydrolase; Amidohydrolase; 2 3-Dihydro-2 3-Dihydroxybenzoate Synthetase; Isochorismatase Hydrolase Protein; Acetyltransferase; Isochorismatase Family Protein Family; Isochorismatase Protein; Isochorismatase-Like Protein; Streptothricin Hydrolase; Pyrimidine Utilization Protein B

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIAKAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGLAEALAHEGVSELVIVGMKTQYCIDTNCRIAAVLGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR

Sequences:

>Translated_181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIAKAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGLAEALAHEGVSELVIVGMKTQYCIDTNCRIAAVLGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR
>Mature_181_residues
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIAKAREAGAPIWAVRHTGPEGSPIAAGTANWQLIESLAIN
PQLDNIFDKTKPSCFYQTGLAEALAHEGVSELVIVGMKTQYCIDTNCRIAAVLGWQVVLADDAHTCMDTAQLSAEAIIAH
HNATLQGAFVRLAKSADIVFR

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081992, Length=186, Percent_Identity=25.2688172043011, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19629; Mature: 19629

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIAKAREAGAPIWAVRHTGPE
CCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEEECHHCCCCEEEEEECCCC
GSPIAAGTANWQLIESLAINPQLDNIFDKTKPSCFYQTGLAEALAHEGVSELVIVGMKTQ
CCCEECCCCCHHHHHHEECCCCHHHHHHCCCCCEEHHHHHHHHHHHCCCCCEEEEECCCE
YCIDTNCRIAAVLGWQVVLADDAHTCMDTAQLSAEAIIAHHNATLQGAFVRLAKSADIVF
EEECCCCEEEEEEEEEEEEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCEEE
R
C
>Mature Secondary Structure
MDNMSLPKTALLIIDMQQGLFYADAPPFNREQVLNNINLLIAKAREAGAPIWAVRHTGPE
CCCCCCCCEEEEEEECCCCEEEECCCCCCHHHHHCCCEEEEEECHHCCCCEEEEEECCCC
GSPIAAGTANWQLIESLAINPQLDNIFDKTKPSCFYQTGLAEALAHEGVSELVIVGMKTQ
CCCEECCCCCHHHHHHEECCCCHHHHHHCCCCCEEHHHHHHHHHHHCCCCCEEEEECCCE
YCIDTNCRIAAVLGWQVVLADDAHTCMDTAQLSAEAIIAHHNATLQGAFVRLAKSADIVF
EEECCCCEEEEEEEEEEEEECCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHCCCCCEEE
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA