| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is fhuE [H]
Identifier: 113969294
GI number: 113969294
Start: 1110440
End: 1112611
Strand: Direct
Name: fhuE [H]
Synonym: Shewmr4_0950
Alternate gene names: 113969294
Gene position: 1110440-1112611 (Clockwise)
Preceding gene: 113969293
Following gene: 113969295
Centisome position: 23.59
GC content: 48.25
Gene sequence:
>2172_bases ATGACTATGCGTTTTAATCTACTTCCACTTGCTGCTGCAGTAACCCTAGCTTTGAATCCTTTGGCGCTGATGGCCGAAGA ACAAACCGCTTCAACAACAGAGACACAAGATCAAAATATCGAAAAAATCACTGTGATGGGTAAATACACAGTGAGTCGTA ATATTGATACCGCAACGGGGTTAGGACTCACGCTGCGGGAAACGCCACAGTCGGTCAGCATTATGACAGCGGATCGGATT GAAGATCAGGCGCTAAATACCGTGGTCGATGTGGTCAACAACACTGTGGGTTTATCATCCTCAAAAACCGATAACGTGCG TAACGGTTTTTCGGCCCGCGGTTTTACCGTGCAAAACTATCAAATTGATGGCGTGCCTTTATCTTGGAGTTTAGGTGGTG ATGCAGGTGAAACGGTATCGGATGTGTCTATCTACGAGCGCGTTGAAGTCGTGCGTGGTGCTACCGGATTATTAACGGGT GCTGGCGATCCTTCGGCCTCGATTAACTTAGTGCGTAAGCATGCCGACAGTTCTGATCTTAAAGGTTATGTGGATGTCGC CACTGGAAGTTGGGATAAAAAACAAGTCACCGCGGATGTGTCTAATGGTCTGAATGAAGACGGCAGCGTGCGTGGGCGCT TGGTCGCTAAGTATGTGAATAGCGATTCTTACCAAGATCTGTATCAAGACCGCAAAACCATTCTCTATGGTGTGGTCGAC AGTGATATTACGGCCAACACCTTGCTGCGCGTCGGTGGTAGCTATAACCACAACGATCCCAAAGGGGCGATGTGGGGCGC GTTGCCTGCCGTCTTTAGTGATGGTTCTGCCACTGATTGGGATACATCGGCCACCACAGCTGCCGATTGGAGCCGCTGGG AAACCAAAAACATCAACTACTTTGCGAACCTGAATCACTACTTCAGCAATGGTTGGCAGCTGGTCGCTAACTACAACCGC ATGGAGTATGAGACCACCACTAAGATGATCTACATGTCGGGTATGCTCGATAAAGACACGGGGGTGGGACTCAGTGGACA GCGTTATCACAGCCATGGTGAAAGTAACTCGAATAACTTTGATGTGCAGCTAAAGGGCGACTATGACCTCTTTGGTCAAA CCCATGAGTTTGTGACGGGCGCTTTGTATAGTAAGCAAAAATCCTACGCCGATACCTATGAGCCTATCCGTGACGATATG ACGGGGTGGGACTCACAAGTGGTGGATAACTTCTACGAATGGCAACAAAATCAGTTTGCCGAGCCAGAATGGTCGAGCAA CGCGAACCGTCAGCTCAATATGGATACCGAGCAAAAAGGCTTTTATGCGGCGACTCGCTTAACGATTACCGATGATTTTA AACTGATTGCCGGTGGACGTATCTCAAGCTGGAACCGTGAAGGCGTGAGCTATGGTACCGATACTAACTTTGGTGATGAT GGGGTGTTTGTGCCCTATGTTGGCGCCTTGTACGATATCAATGACGCGCACCGTATTTACGCCAGTTATACCGGGATTTT TAACCCGCAGAATAATTTCGATGCCGATCAAAATTACCTCGACCCATTAGAAGGCAAAGCCTACGAATTAGGTCTGAAGA GTGCTTATCTTGACGATCGTCTACATACCACTGTGGCCGTGTTCCAAATTGACCAAGATAACTTGGCAACCTTAGCCGGA ACGATTGTTATCGGTGGTCAACCCGTGAATTATTATGAGGCCGCACAAGGCACTAAGAGTAAGGGATTTGAGCTAGAGGT GGTGGGTGAGCCTGCCGATGGCTGGAATATCTCTGCGGGTTACTCGCAATTTAATGCCGAAGATGCAGAGGGTAAGCGGG TTGCGACTACCAGTCCGCAGAAGCAATTCAAACTGTTTACCACCTACCAATTTGTGGACTTATTGCCTGAGTTAACCATA GGTGGTGGGGTGAATTGGCAAAGCGACAGTTACTCTGAAGGCGGTGGTGTGGCAATCAAGCAGGATGCTTACTCCCTAGT GAATCTGATGGCACGCTACGATCTGGCTGAGAATATGGATCTGCAGGTTAACGTAGAGAATCTGCTGGATGAGAAATATT ATGCCTATATGACAGCGTCTGGCATTGCTTACAGTGCGTATCACTACGGCGCGCCACGTAATTTTACCGTCAGCTTTAAC TATCGTTTTTAA
Upstream 100 bases:
>100_bases GACTTAATAATGATAAATTTGTTACATTTATCACATAAATCATAAATGCAAATCGTTCTCAATAGTGTTACCGTGTGTGC ACCTTAACAAAATTTGCTAA
Downstream 100 bases:
>100_bases GCATTTTACCCGTTGAACTCAAAAAGCCGGCGCCCTTAAGAGCGTCGGCTTTTTGCTATCGACTTCAATCCCATTTGCGG CGCTGACGTTGCCTTATATG
Product: TonB-dependent siderophore receptor
Products: NA
Alternate protein names: Outer-membrane receptor for Fe(III)-coprogen, Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid [H]
Number of amino acids: Translated: 723; Mature: 722
Protein sequence:
>723_residues MTMRFNLLPLAAAVTLALNPLALMAEEQTASTTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRI EDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTG AGDPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQDLYQDRKTILYGVVD SDITANTLLRVGGSYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNR MEYETTTKMIYMSGMLDKDTGVGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDM TGWDSQVVDNFYEWQQNQFAEPEWSSNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDD GVFVPYVGALYDINDAHRIYASYTGIFNPQNNFDADQNYLDPLEGKAYELGLKSAYLDDRLHTTVAVFQIDQDNLATLAG TIVIGGQPVNYYEAAQGTKSKGFELEVVGEPADGWNISAGYSQFNAEDAEGKRVATTSPQKQFKLFTTYQFVDLLPELTI GGGVNWQSDSYSEGGGVAIKQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMTASGIAYSAYHYGAPRNFTVSFN YRF
Sequences:
>Translated_723_residues MTMRFNLLPLAAAVTLALNPLALMAEEQTASTTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRI EDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTG AGDPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQDLYQDRKTILYGVVD SDITANTLLRVGGSYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNR MEYETTTKMIYMSGMLDKDTGVGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDM TGWDSQVVDNFYEWQQNQFAEPEWSSNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDD GVFVPYVGALYDINDAHRIYASYTGIFNPQNNFDADQNYLDPLEGKAYELGLKSAYLDDRLHTTVAVFQIDQDNLATLAG TIVIGGQPVNYYEAAQGTKSKGFELEVVGEPADGWNISAGYSQFNAEDAEGKRVATTSPQKQFKLFTTYQFVDLLPELTI GGGVNWQSDSYSEGGGVAIKQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMTASGIAYSAYHYGAPRNFTVSFN YRF >Mature_722_residues TMRFNLLPLAAAVTLALNPLALMAEEQTASTTETQDQNIEKITVMGKYTVSRNIDTATGLGLTLRETPQSVSIMTADRIE DQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNYQIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGA GDPSASINLVRKHADSSDLKGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQDLYQDRKTILYGVVDS DITANTLLRVGGSYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINYFANLNHYFSNGWQLVANYNRM EYETTTKMIYMSGMLDKDTGVGLSGQRYHSHGESNSNNFDVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMT GWDSQVVDNFYEWQQNQFAEPEWSSNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDDG VFVPYVGALYDINDAHRIYASYTGIFNPQNNFDADQNYLDPLEGKAYELGLKSAYLDDRLHTTVAVFQIDQDNLATLAGT IVIGGQPVNYYEAAQGTKSKGFELEVVGEPADGWNISAGYSQFNAEDAEGKRVATTSPQKQFKLFTTYQFVDLLPELTIG GGVNWQSDSYSEGGGVAIKQDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMTASGIAYSAYHYGAPRNFTVSFNY RF
Specific function: Required for the uptake of Fe(3+) via coprogen, ferrioxamine B, and rhodotorulic acid [H]
COG id: COG4773
COG function: function code P; Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787344, Length=733, Percent_Identity=38.3356070941337, Blast_Score=474, Evalue=1e-135, Organism=Escherichia coli, GI1786344, Length=729, Percent_Identity=25.6515775034294, Blast_Score=113, Evalue=4e-26, Organism=Escherichia coli, GI1787024, Length=347, Percent_Identity=27.0893371757925, Blast_Score=88, Evalue=2e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 - InterPro: IPR010105 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 79870; Mature: 79739
Theoretical pI: Translated: 4.30; Mature: 4.30
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMRFNLLPLAAAVTLALNPLALMAEEQTASTTETQDQNIEKITVMGKYTVSRNIDTATG CCEEEECHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCC LGLTLRETPQSVSIMTADRIEDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNY CCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEEE QIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAGDPSASINLVRKHADSSDL EECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEHEEECCCCCCC KGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQDLYQDRKTILYGVVD CEEEEEECCCCCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCEEEEEEEC SDITANTLLRVGGSYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINY CCCCHHHHHEECCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE FANLNHYFSNGWQLVANYNRMEYETTTKMIYMSGMLDKDTGVGLSGQRYHSHGESNSNNF EECCCHHHCCCEEEEECCCCEEEEHHEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEE DVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTGWDSQVVDNFYEWQQNQFA EEEEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC EPEWSSNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDD CCCCCCCCCCEECCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC GVFVPYVGALYDINDAHRIYASYTGIFNPQNNFDADQNYLDPLEGKAYELGLKSAYLDDR CEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHCCC LHTTVAVFQIDQDNLATLAGTIVIGGQPVNYYEAAQGTKSKGFELEVVGEPADGWNISAG CEEEEEEEEECCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEEEECCCCCCEEECC YSQFNAEDAEGKRVATTSPQKQFKLFTTYQFVDLLPELTIGGGVNWQSDSYSEGGGVAIK CCCCCCCCCCCCEEECCCCHHHEEEEEHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEE QDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMTASGIAYSAYHYGAPRNFTVSFN HHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCEEEEEEECCEEEEEEECCCCCEEEEEEE YRF ECC >Mature Secondary Structure TMRFNLLPLAAAVTLALNPLALMAEEQTASTTETQDQNIEKITVMGKYTVSRNIDTATG CEEEECHHHHHHHHHHCCCHHEEECCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCC LGLTLRETPQSVSIMTADRIEDQALNTVVDVVNNTVGLSSSKTDNVRNGFSARGFTVQNY CCEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEEE QIDGVPLSWSLGGDAGETVSDVSIYERVEVVRGATGLLTGAGDPSASINLVRKHADSSDL EECCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEHEEECCCCCCC KGYVDVATGSWDKKQVTADVSNGLNEDGSVRGRLVAKYVNSDSYQDLYQDRKTILYGVVD CEEEEEECCCCCCCEEEEHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCEEEEEEEC SDITANTLLRVGGSYNHNDPKGAMWGALPAVFSDGSATDWDTSATTAADWSRWETKNINY CCCCHHHHHEECCCCCCCCCCCCHHHCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEE FANLNHYFSNGWQLVANYNRMEYETTTKMIYMSGMLDKDTGVGLSGQRYHSHGESNSNNF EECCCHHHCCCEEEEECCCCEEEEHHEEEEEEECCCCCCCCCCCCCCHHHCCCCCCCCEE DVQLKGDYDLFGQTHEFVTGALYSKQKSYADTYEPIRDDMTGWDSQVVDNFYEWQQNQFA EEEEECCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC EPEWSSNANRQLNMDTEQKGFYAATRLTITDDFKLIAGGRISSWNREGVSYGTDTNFGDD CCCCCCCCCCEECCCCCCCCEEEEEEEEEECCEEEEECCCCCCCCCCCCCCCCCCCCCCC GVFVPYVGALYDINDAHRIYASYTGIFNPQNNFDADQNYLDPLEGKAYELGLKSAYLDDR CEECCCCCEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHCCC LHTTVAVFQIDQDNLATLAGTIVIGGQPVNYYEAAQGTKSKGFELEVVGEPADGWNISAG CEEEEEEEEECCCCCEEEEEEEEECCCCCCHHHHCCCCCCCCEEEEEEECCCCCCEEECC YSQFNAEDAEGKRVATTSPQKQFKLFTTYQFVDLLPELTIGGGVNWQSDSYSEGGGVAIK CCCCCCCCCCCCEEECCCCHHHEEEEEHHHHHHHCCCCEECCCCCCCCCCCCCCCCEEEE QDAYSLVNLMARYDLAENMDLQVNVENLLDEKYYAYMTASGIAYSAYHYGAPRNFTVSFN HHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCEEEEEEECCEEEEEEECCCCCEEEEEEE YRF ECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2162465; 8905232; 9278503; 3032906 [H]