| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
Click here to switch to the map view.
The map label for this gene is pucG [H]
Identifier: 113968710
GI number: 113968710
Start: 392794
End: 393927
Strand: Direct
Name: pucG [H]
Synonym: Shewmr4_0366
Alternate gene names: 113968710
Gene position: 392794-393927 (Clockwise)
Preceding gene: 113968709
Following gene: 113968711
Centisome position: 8.35
GC content: 52.03
Gene sequence:
>1134_bases ATGTTACCTGCACCGCATTTTTCTGCCTTTAATCCGCCTCGCCGCATTTTGATGGGGCCAGGTCCATCGGATGTTTATCC TGAAGTATTAGCCGCACAGGCAAGACCGACCGTCGGCCACCTAGATCCATTATTTGTTGGCATGATGGATGAGCTTAAGA GCCTGATCCAATATGCGTTTCAAACCAAAAATGAAATGACGATGGCAGTGTCGGCCCCCGGCAGTGCAGGCATGGAAACC TGTTTTGTGAACTTAGTCGAACCCGGCGAAAAGGTGATTGTGTGCCGCAATGGCGTGTTTGGTGAGCGTATGCGCCAAAA CGTCGAGCGTGTAGGTGCGATTGCTGTGCTGGTGGATAATGAATGGGGCACACCCGTCGACCCTGCTGCCGTTGAAGCGG CGCTTAAGGCCAACCCCGATGCTAAATTCCTTGCCTTTGTGCACGCCGAAACTTCAACGGGCGCATTGAGCGATGCTAAA ATCCTGTGCGCGCTGGCAAAACAATACGGCTGTTTATCGATTGTCGATGCGGTGACATCCCTCGGTGGCGTGGAATTAAG AGTCGATGAATGGGGAATCGATGCCATTTATTCTGGTAGTCAGAAATGTCTCTCCTGCGTGCCGGGATTATCGCCTGTGT CTTTCTCGCCCAATGCGGTGGAAAAGCTTAAAAACCGTAAAACGCCAGTGCAGAGCTGGTTCCTCGATCAAAGTCTGGTC ATGGCCTATTGGACTAGCGCTGGTGGCAAGCGCAGTTATCACCATACCGCGCCCGTTAATGCTCTTTATGCCCTGCACGA ATCGCTGCGTTTATTGGCCGAAGAAGGTTTAGAAAATGCGTGGAAGCGTCATCAAGACATGCATTTAGTGCTGCGCGCCG GCCTTGAAAAACTTGGCCTGAAATTTGTGGTTGCTGAAGCTTCGTGCTTGCCGCAGCTAAATGCCATTTATATCCCCAAA GGCGTTGATGATGCCGCCGTGCGTGCGCGTCTACTCAAGGATTACAACCTTGAAATTGGTGCTGGTCTTGGTGCTCTAGC GGGTAAAGCTTGGCGCATTGGTTTAATGGGCTTTGGTGCCCGCCGTGAGAATGTCGCGCTCTGTTTGCGCGCGCTAGAAG AGGTGCTGAACTAA
Upstream 100 bases:
>100_bases ACAGGCGCCCCTTTTTGTGGTAGTTTGGTTTAACAAGTTAAGAGTGAATGCTCTAGTCACACAATAATCAGACCTCGACC CTACGCATTAAGGAGACATG
Downstream 100 bases:
>100_bases TATGTCAGTTTCGCGTATAAGGATGTTACGCAGAGTGAGTTTGCGCTTAGTGAGTTCACGTTTATTGATTGGCGGTTTAA TTCTGATCTTAAGTGGTTGT
Product: alanine-glyoxylate aminotransferase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 377; Mature: 377
Protein sequence:
>377_residues MLPAPHFSAFNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVGMMDELKSLIQYAFQTKNEMTMAVSAPGSAGMET CFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWGTPVDPAAVEAALKANPDAKFLAFVHAETSTGALSDAK ILCALAKQYGCLSIVDAVTSLGGVELRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPNAVEKLKNRKTPVQSWFLDQSLV MAYWTSAGGKRSYHHTAPVNALYALHESLRLLAEEGLENAWKRHQDMHLVLRAGLEKLGLKFVVAEASCLPQLNAIYIPK GVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGARRENVALCLRALEEVLN
Sequences:
>Translated_377_residues MLPAPHFSAFNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVGMMDELKSLIQYAFQTKNEMTMAVSAPGSAGMET CFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWGTPVDPAAVEAALKANPDAKFLAFVHAETSTGALSDAK ILCALAKQYGCLSIVDAVTSLGGVELRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPNAVEKLKNRKTPVQSWFLDQSLV MAYWTSAGGKRSYHHTAPVNALYALHESLRLLAEEGLENAWKRHQDMHLVLRAGLEKLGLKFVVAEASCLPQLNAIYIPK GVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGARRENVALCLRALEEVLN >Mature_377_residues MLPAPHFSAFNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVGMMDELKSLIQYAFQTKNEMTMAVSAPGSAGMET CFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDNEWGTPVDPAAVEAALKANPDAKFLAFVHAETSTGALSDAK ILCALAKQYGCLSIVDAVTSLGGVELRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPNAVEKLKNRKTPVQSWFLDQSLV MAYWTSAGGKRSYHHTAPVNALYALHESLRLLAEEGLENAWKRHQDMHLVLRAGLEKLGLKFVVAEASCLPQLNAIYIPK GVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGARRENVALCLRALEEVLN
Specific function: Could encode ureidoglycolase or L-alanine:glyoxylate aminotransferase, or perhaps both activities [H]
COG id: COG0075
COG function: function code E; Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557289, Length=366, Percent_Identity=39.0710382513661, Blast_Score=261, Evalue=6e-70, Organism=Caenorhabditis elegans, GI17536281, Length=357, Percent_Identity=39.4957983193277, Blast_Score=248, Evalue=3e-66, Organism=Saccharomyces cerevisiae, GI6321079, Length=371, Percent_Identity=27.7628032345013, Blast_Score=99, Evalue=2e-21, Organism=Drosophila melanogaster, GI17530823, Length=368, Percent_Identity=38.8586956521739, Blast_Score=255, Evalue=3e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000192 - InterPro: IPR020578 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00266 Aminotran_5 [H]
EC number: 2.6.1.-
Molecular weight: Translated: 40739; Mature: 40739
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: PS00595 AA_TRANSFER_CLASS_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPAPHFSAFNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVGMMDELKSLIQYAF CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTKNEMTMAVSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDN HCCCCEEEEEECCCCCCHHHHEEEEECCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEEC EWGTPVDPAAVEAALKANPDAKFLAFVHAETSTGALSDAKILCALAKQYGCLSIVDAVTS CCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH LGGVELRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPNAVEKLKNRKTPVQSWFLDQSLV CCCEEEEEECCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH MAYWTSAGGKRSYHHTAPVNALYALHESLRLLAEEGLENAWKRHQDMHLVLRAGLEKLGL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCE KFVVAEASCLPQLNAIYIPKGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGA EEEEECHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCEECCCHHHHCCCCEEEEEEECCC RRENVALCLRALEEVLN CHHHHHHHHHHHHHHHC >Mature Secondary Structure MLPAPHFSAFNPPRRILMGPGPSDVYPEVLAAQARPTVGHLDPLFVGMMDELKSLIQYAF CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH QTKNEMTMAVSAPGSAGMETCFVNLVEPGEKVIVCRNGVFGERMRQNVERVGAIAVLVDN HCCCCEEEEEECCCCCCHHHHEEEEECCCCEEEEECCCCCHHHHHHHHHHHCEEEEEEEC EWGTPVDPAAVEAALKANPDAKFLAFVHAETSTGALSDAKILCALAKQYGCLSIVDAVTS CCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHH LGGVELRVDEWGIDAIYSGSQKCLSCVPGLSPVSFSPNAVEKLKNRKTPVQSWFLDQSLV CCCEEEEEECCCCHHHHCCCHHHHHHCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH MAYWTSAGGKRSYHHTAPVNALYALHESLRLLAEEGLENAWKRHQDMHLVLRAGLEKLGL HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCE KFVVAEASCLPQLNAIYIPKGVDDAAVRARLLKDYNLEIGAGLGALAGKAWRIGLMGFGA EEEEECHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCEECCCHHHHCCCCEEEEEEECCC RRENVALCLRALEEVLN CHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377; 11344136 [H]