| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is ilvA [H]
Identifier: 113968709
GI number: 113968709
Start: 390978
End: 392651
Strand: Direct
Name: ilvA [H]
Synonym: Shewmr4_0365
Alternate gene names: 113968709
Gene position: 390978-392651 (Clockwise)
Preceding gene: 113968708
Following gene: 113968710
Centisome position: 8.31
GC content: 53.88
Gene sequence:
>1674_bases ATGTTATCTCTCGCATCGTCGCAAACGGAGCAGGCTGAGGCCCAGTCCTCTCAAGTTCAATCCTCTCAAGTTCAGTCCGA TAAGGCGCAATCGGGCACTTCTGCCTTAGAAAAGAGTCAGCTTGCGCAAAGCTACCTGCAAAAAATCCTGCTGTCGTCGG TTTATGACGTTGCGAAAGTGACCCCACTCTCGAGCCTGAATAAACTCTCGGCGCGTTTGGGCTGCCAAGTATTTTTAAAG CGTGAGGATATGCAGCCTGTGCATTCCTTCAAGCTGCGTGGCGCCTATAACCGTATCGCCCAGTTAAGCCAAGCCGAATG TCAACGCGGCGTAGTGTGCGCCTCGGCGGGTAACCATGCTCAAGGCGTGGCCATGTCAGCGGCCAGTCGTGGTGTGGATG CTGTGATTGTGATGCCCGAAACTACGCCAGATATTAAAGTCGATGCGGTGCGCCGCTTGGGTGGCAACGTGGTGTTGCAC GGCCAAGCCTTCGATCAGGCCAATGGCTTTGCGATGGAGATGGCCGAGCAGGAGGGGCGGGTGTATATCGCCCCCTTCGA TGACGAAGCCGTTATCGCAGGCCAAGGCACTATCGCCCAAGAAATGCTGCAACAGCAGCGCGACCTTGAAGTGGTATTTG TACCCGTGGGCGGCGGTGGCTTAATTGCTGGGATTGCTGCCTATTACAAAGCGGTGATGCCACAGGTCAAAATTGTTGGG GTGGAGCCTGAAGATGCGGCCTGCTTAAAAGCGGCGATGGAGGCGGGCGAGCCTGTCACACTCCCGCAGGTCGGCTTGTT TGCCGATGGAGTCGCGGTTAAACGTATCGGCACCGAGCCATTTCGCCTAGCTAAGTGGTTTGTGGATGAAGTGGTGACGG TAACGTCCGACGAGATCTGCGCCGCCGTTAAAGATATTTTTGAGGATACCCGCGCCATTGCCGAACCTGCAGGTGCTTTA TCCCTTGCTGGGCTTAAAAAATATGTCAGCACCAATGCTACGGGCGAGAGTGGCAAGGGTGAGAAAGTCGCGGCGATTTT AAGTGGCGCGAATGTGAACTTCCACAGCCTACGTTATGTGTCGGAGCGTTGCGAGTTGGGTGAGCAAAAAGAAGCCGTGC TGGCGGTTAAAGTGCCCGAGCGTCCCGGCAGCTTCCTGCGTTTTTGTGAGTTGCTCGAAAAGCGGGTGATGACCGAATTT AACTATCGTTTTAGCAGCCGCGATATGGCGGTGGTGTTTGCGGGTATTCGTTTGACCAAAGGCCATGGCGAATTAGAGCA GATCATCAATACCTTAGAAGATAATGGCTTCGAGGTGCAGGACTTATCCGGTGACGAAACCGCGAAATTACATGTGCGCT ATATGGTCGGTGGTCATCCGCCAGAGCCGTTAGAGGAGCGCCTATTTAGCTTCGAGTTTCCCGAGCATCCGGGGGCGCTG CTGAAGTTTTTAACTACCCTGCAGAGCAAGTGGAATATCAGTTTATTCCATTACCGTAATCACGGCGCGGCCTTTGGGCG AGTGCTGGCGGGGTTTGAAGTCCCCGAGGGCGATGCCTTGCCGTTTCAGCAGTTTTTAACTGAGCTGGGATTTGTCTATC AAGAAGAGACGCAAAGCCCTGCTTATCAGCTGTTTTTGAATGCCGGAAAAGGGAAAAAGAGCCTGCCTTTGTAG
Upstream 100 bases:
>100_bases CGTCAGCGTTATGTGTCGATGGCGCTCAAAGCCTACGCCATGCTTGCCACCAGTGCCGATAAGGGCGCGGTGCGCGATCG CAGTAAGTTGGAGGACTGAT
Downstream 100 bases:
>100_bases TCGCTTTGCTTTAGGTTACAACTTAGGCTAAAGGAGGGGCGCACAGGCGCCCCTTTTTGTGGTAGTTTGGTTTAACAAGT TAAGAGTGAATGCTCTAGTC
Product: threonine dehydratase
Products: NA
Alternate protein names: Threonine deaminase [H]
Number of amino acids: Translated: 557; Mature: 557
Protein sequence:
>557_residues MLSLASSQTEQAEAQSSQVQSSQVQSDKAQSGTSALEKSQLAQSYLQKILLSSVYDVAKVTPLSSLNKLSARLGCQVFLK REDMQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHAQGVAMSAASRGVDAVIVMPETTPDIKVDAVRRLGGNVVLH GQAFDQANGFAMEMAEQEGRVYIAPFDDEAVIAGQGTIAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIVG VEPEDAACLKAAMEAGEPVTLPQVGLFADGVAVKRIGTEPFRLAKWFVDEVVTVTSDEICAAVKDIFEDTRAIAEPAGAL SLAGLKKYVSTNATGESGKGEKVAAILSGANVNFHSLRYVSERCELGEQKEAVLAVKVPERPGSFLRFCELLEKRVMTEF NYRFSSRDMAVVFAGIRLTKGHGELEQIINTLEDNGFEVQDLSGDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGAL LKFLTTLQSKWNISLFHYRNHGAAFGRVLAGFEVPEGDALPFQQFLTELGFVYQEETQSPAYQLFLNAGKGKKSLPL
Sequences:
>Translated_557_residues MLSLASSQTEQAEAQSSQVQSSQVQSDKAQSGTSALEKSQLAQSYLQKILLSSVYDVAKVTPLSSLNKLSARLGCQVFLK REDMQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHAQGVAMSAASRGVDAVIVMPETTPDIKVDAVRRLGGNVVLH GQAFDQANGFAMEMAEQEGRVYIAPFDDEAVIAGQGTIAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIVG VEPEDAACLKAAMEAGEPVTLPQVGLFADGVAVKRIGTEPFRLAKWFVDEVVTVTSDEICAAVKDIFEDTRAIAEPAGAL SLAGLKKYVSTNATGESGKGEKVAAILSGANVNFHSLRYVSERCELGEQKEAVLAVKVPERPGSFLRFCELLEKRVMTEF NYRFSSRDMAVVFAGIRLTKGHGELEQIINTLEDNGFEVQDLSGDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGAL LKFLTTLQSKWNISLFHYRNHGAAFGRVLAGFEVPEGDALPFQQFLTELGFVYQEETQSPAYQLFLNAGKGKKSLPL >Mature_557_residues MLSLASSQTEQAEAQSSQVQSSQVQSDKAQSGTSALEKSQLAQSYLQKILLSSVYDVAKVTPLSSLNKLSARLGCQVFLK REDMQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHAQGVAMSAASRGVDAVIVMPETTPDIKVDAVRRLGGNVVLH GQAFDQANGFAMEMAEQEGRVYIAPFDDEAVIAGQGTIAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIVG VEPEDAACLKAAMEAGEPVTLPQVGLFADGVAVKRIGTEPFRLAKWFVDEVVTVTSDEICAAVKDIFEDTRAIAEPAGAL SLAGLKKYVSTNATGESGKGEKVAAILSGANVNFHSLRYVSERCELGEQKEAVLAVKVPERPGSFLRFCELLEKRVMTEF NYRFSSRDMAVVFAGIRLTKGHGELEQIINTLEDNGFEVQDLSGDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGAL LKFLTTLQSKWNISLFHYRNHGAAFGRVLAGFEVPEGDALPFQQFLTELGFVYQEETQSPAYQLFLNAGKGKKSLPL
Specific function: Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine, followed by rehydration and liberation of ammonia. Deaminates L-threonine, but also L-serine to a lesser extent [H]
COG id: COG1171
COG function: function code E; Threonine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serine/threonine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI11345492, Length=340, Percent_Identity=32.6470588235294, Blast_Score=157, Evalue=3e-38, Organism=Homo sapiens, GI19923959, Length=308, Percent_Identity=30.8441558441558, Blast_Score=103, Evalue=4e-22, Organism=Homo sapiens, GI33469958, Length=310, Percent_Identity=28.0645161290323, Blast_Score=99, Evalue=7e-21, Organism=Escherichia coli, GI1790207, Length=503, Percent_Identity=60.0397614314115, Blast_Score=603, Evalue=1e-174, Organism=Escherichia coli, GI1789505, Length=306, Percent_Identity=38.2352941176471, Blast_Score=187, Evalue=2e-48, Organism=Escherichia coli, GI1789235, Length=257, Percent_Identity=25.6809338521401, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI2367138, Length=206, Percent_Identity=27.6699029126214, Blast_Score=65, Evalue=8e-12, Organism=Caenorhabditis elegans, GI71991565, Length=327, Percent_Identity=35.1681957186544, Blast_Score=164, Evalue=2e-40, Organism=Caenorhabditis elegans, GI17537387, Length=328, Percent_Identity=31.4024390243902, Blast_Score=140, Evalue=1e-33, Organism=Caenorhabditis elegans, GI17508781, Length=255, Percent_Identity=29.8039215686275, Blast_Score=118, Evalue=7e-27, Organism=Saccharomyces cerevisiae, GI6320930, Length=513, Percent_Identity=51.0721247563353, Blast_Score=481, Evalue=1e-136, Organism=Saccharomyces cerevisiae, GI6322631, Length=303, Percent_Identity=35.973597359736, Blast_Score=166, Evalue=8e-42, Organism=Saccharomyces cerevisiae, GI6319788, Length=297, Percent_Identity=25.5892255892256, Blast_Score=88, Evalue=4e-18, Organism=Drosophila melanogaster, GI21355833, Length=319, Percent_Identity=34.1692789968652, Blast_Score=147, Evalue=2e-35, Organism=Drosophila melanogaster, GI24645328, Length=255, Percent_Identity=34.5098039215686, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24643623, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=9e-14, Organism=Drosophila melanogaster, GI20129101, Length=207, Percent_Identity=28.5024154589372, Blast_Score=75, Evalue=9e-14,
Paralogues:
None
Copy number: 1344 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR005787 - InterPro: IPR001721 [H]
Pfam domain/function: PF00291 PALP; PF00585 Thr_dehydrat_C [H]
EC number: =4.3.1.19 [H]
Molecular weight: Translated: 60417; Mature: 60417
Theoretical pI: Translated: 5.19; Mature: 5.19
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSLASSQTEQAEAQSSQVQSSQVQSDKAQSGTSALEKSQLAQSYLQKILLSSVYDVAKV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPLSSLNKLSARLGCQVFLKREDMQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHA CCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCC QGVAMSAASRGVDAVIVMPETTPDIKVDAVRRLGGNVVLHGQAFDQANGFAMEMAEQEGR CCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEHHHHCCC VYIAPFDDEAVIAGQGTIAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIVG EEEEECCCCEEEECCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE VEPEDAACLKAAMEAGEPVTLPQVGLFADGVAVKRIGTEPFRLAKWFVDEVVTVTSDEIC ECCCHHHHHHHHHHCCCCCCCCCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHH AAVKDIFEDTRAIAEPAGALSLAGLKKYVSTNATGESGKGEKVAAILSGANVNFHSLRYV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHH SERCELGEQKEAVLAVKVPERPGSFLRFCELLEKRVMTEFNYRFSSRDMAVVFAGIRLTK HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEC GHGELEQIINTLEDNGFEVQDLSGDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGAL CCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHH LKFLTTLQSKWNISLFHYRNHGAAFGRVLAGFEVPEGDALPFQQFLTELGFVYQEETQSP HHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHCCCCC AYQLFLNAGKGKKSLPL EEEEEEECCCCCCCCCC >Mature Secondary Structure MLSLASSQTEQAEAQSSQVQSSQVQSDKAQSGTSALEKSQLAQSYLQKILLSSVYDVAKV CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TPLSSLNKLSARLGCQVFLKREDMQPVHSFKLRGAYNRIAQLSQAECQRGVVCASAGNHA CCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCC QGVAMSAASRGVDAVIVMPETTPDIKVDAVRRLGGNVVLHGQAFDQANGFAMEMAEQEGR CCHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEHHHHCCC VYIAPFDDEAVIAGQGTIAQEMLQQQRDLEVVFVPVGGGGLIAGIAAYYKAVMPQVKIVG EEEEECCCCEEEECCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHCCCEEEEE VEPEDAACLKAAMEAGEPVTLPQVGLFADGVAVKRIGTEPFRLAKWFVDEVVTVTSDEIC ECCCHHHHHHHHHHCCCCCCCCCCCHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCHHHH AAVKDIFEDTRAIAEPAGALSLAGLKKYVSTNATGESGKGEKVAAILSGANVNFHSLRYV HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCHHHHHHH SERCELGEQKEAVLAVKVPERPGSFLRFCELLEKRVMTEFNYRFSSRDMAVVFAGIRLTK HHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEC GHGELEQIINTLEDNGFEVQDLSGDETAKLHVRYMVGGHPPEPLEERLFSFEFPEHPGAL CCCHHHHHHHHHHCCCEEEEECCCCCEEEEEEEEEECCCCCCHHHHHHHCCCCCCCCHHH LKFLTTLQSKWNISLFHYRNHGAAFGRVLAGFEVPEGDALPFQQFLTELGFVYQEETQSP HHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHCCCCC AYQLFLNAGKGKKSLPL EEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3315862; 3550695; 1379743; 9278503; 3003115; 2473940; 9562556 [H]