| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is cph2 [H]
Identifier: 113968700
GI number: 113968700
Start: 379266
End: 381092
Strand: Direct
Name: cph2 [H]
Synonym: Shewmr4_0356
Alternate gene names: 113968700
Gene position: 379266-381092 (Clockwise)
Preceding gene: 113968699
Following gene: 113968701
Centisome position: 8.06
GC content: 46.85
Gene sequence:
>1827_bases ATGAAGCACCAACATCATTCCATCAGCCATAGAATGACACTCACTATTATTGGTGTGAGTTCGTTTTTTGCTGTCCTGAC TATGTTGATACAGTTGATATGGAACTATCAGGAGAGCATAGATAACACTACTGCGGATATTCGCGAATACTCTGAATCTA TCTTACCTACAGTGGCTAAATCACTTTGGGATGTTGACCATGGTTTGTTATCGGATTTGCTGTCCGGCCTAGGGATGATG CCCATGGTGGCGAGCGTTAATCTGGAAAGTGTGGATGGTGTGACGATACAAATGGGAAAATCCATAGGCGCCCATCATGA TGCAAAGCAAAGCTTGTTCTATTATCCGGTCAAATATCAAGATCAGCAGATAGGTATGCTGATCGTGGGCTTAGATACTA ATAAGTTGTACTACGAATTGTGGCAGCAACTGATTATTATCGTGTTAGGTAACGGGCTTAAAACCCTGATAATGATTTAC CTCATCCTCACACTGGTACGCTTATTGGTCACCAACCGCTTATCGGCGTTGGAGCGGTTTGCCAATCAAATTAATTTGAA CTCCCTACCTAAGCTCAATGTGCCCATGACTGTGATGCAAAGCTCCGATGAGATTGGCCATGTCGCCCAGTCGCTACAGG CCATGTATCAACGCATCCGTAATGATTTGGCGATCAATAAGCGCCAGCAACGTGCGTTGAAACAACAGCAAAACCAGTTG GCGAAATTGGTCGATGAGCGGACTCAAGAGCTCAATTGGCAATCCAAGGCGAATCAGCTATTAGCCGAAATGTCGTTGCA ATTTTTGACGACAGATACTTCTAAACTCGACGAATCTTTAGCCGAGGTGTGCCGTCGCATTGGTAATTTATTTGATGTCG AACGGGTGAGCATCATTGAGTTTACCCAGCTACATGCCCGTTATCGCAGTTTTTGGAGTTGTGAGTCGCAGGCGGATCTG GTCCAAGATATTCCTGTCGATATTGCGGCAGTGCTGGCACAGAAATTTGTATCAGAGTCGACATTAGTTATTGAATCAAT AGATTATTTAAAAGATGAATTCCCAGAGGAATATCAGGCCATGTGTTCGGTTGGTATCTGCTCTATTGCTGCCTATGCGA TTAAAAATGCCGATGAATTATTAGGTTTACTCTCGCTGTCTATGATCAGCCGCCCATTAAACTGGAGTGTGCAAAAGAAG GTGATGCTGACGCAATTTGCGGCGGCACTGAACGAATTATTGCTGCGGGAGGAAAAAGAGCGACAGATGCTCAGCCTGCA ACAGGCCTTAGTATCGGTAAATACCCAGCTGCGGGTGATGGCCGACACCGATGAATTAACCGGATTAAGCAACCGTCGCC CCTTCACTCAAACCCTAGAAACCTTGCTCCAGCAAGACACTCCGTTCGGCCTGCTCATGTTGGATGTCGATTACTTTAAG AGTTACAACGATACCTACGGCCACCTCGAGGGCGATGCGGCGCTCAAGCGAGTGGCGCAGGCGTTAACTCGGTGTGGTAT TTTGCCACAGGAGAATTTACTTGCCCGAATTGGTGGTGAGGAGTTCGCGATTGTTCTGCAACAGATTTCACCAATCCAAT TGGAGGCGATAGCCAACCAGCTCTGCTACCAAGTGGCCGCCTTGGAGATCCCCCATAAAAGCTCCCCAAAGGGCAAGATC ACCCTGAGTATTGGTGGGGTGTATTTTCCTAAGGAAAGCCAGGATAGCTTAACGTTGTCGGAGGTGCTGCGCCGTACCGA TATTTGTCTGTATCGCGCTAAAGATCAGGGGCGCAACACCGTGGTGATTGATTCGAACTATAAGTGA
Upstream 100 bases:
>100_bases GATTTTTATCGAATGTTAGTCGCTCGGGATTGGGCGGGGATTTTTCAGACGCAGATTTTGAATAAGTTGCCACAACAATA AGAACAATAAATAGGTATCC
Downstream 100 bases:
>100_bases CTGTTAATTGAGGCACAGCATCACAGCTTGTCTTGAGCATGGCGCGGCGCCGATTTATTTCTGCTTTTGGCCTGCTATAA TTGCCGCCCTTTAATTTCTA
Product: diguanylate cyclase
Products: NA
Alternate protein names: Bacteriophytochrome cph2 [H]
Number of amino acids: Translated: 608; Mature: 608
Protein sequence:
>608_residues MKHQHHSISHRMTLTIIGVSSFFAVLTMLIQLIWNYQESIDNTTADIREYSESILPTVAKSLWDVDHGLLSDLLSGLGMM PMVASVNLESVDGVTIQMGKSIGAHHDAKQSLFYYPVKYQDQQIGMLIVGLDTNKLYYELWQQLIIIVLGNGLKTLIMIY LILTLVRLLVTNRLSALERFANQINLNSLPKLNVPMTVMQSSDEIGHVAQSLQAMYQRIRNDLAINKRQQRALKQQQNQL AKLVDERTQELNWQSKANQLLAEMSLQFLTTDTSKLDESLAEVCRRIGNLFDVERVSIIEFTQLHARYRSFWSCESQADL VQDIPVDIAAVLAQKFVSESTLVIESIDYLKDEFPEEYQAMCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKK VMLTQFAAALNELLLREEKERQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFK SYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQLCYQVAALEIPHKSSPKGKI TLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNTVVIDSNYK
Sequences:
>Translated_608_residues MKHQHHSISHRMTLTIIGVSSFFAVLTMLIQLIWNYQESIDNTTADIREYSESILPTVAKSLWDVDHGLLSDLLSGLGMM PMVASVNLESVDGVTIQMGKSIGAHHDAKQSLFYYPVKYQDQQIGMLIVGLDTNKLYYELWQQLIIIVLGNGLKTLIMIY LILTLVRLLVTNRLSALERFANQINLNSLPKLNVPMTVMQSSDEIGHVAQSLQAMYQRIRNDLAINKRQQRALKQQQNQL AKLVDERTQELNWQSKANQLLAEMSLQFLTTDTSKLDESLAEVCRRIGNLFDVERVSIIEFTQLHARYRSFWSCESQADL VQDIPVDIAAVLAQKFVSESTLVIESIDYLKDEFPEEYQAMCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKK VMLTQFAAALNELLLREEKERQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFK SYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQLCYQVAALEIPHKSSPKGKI TLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNTVVIDSNYK >Mature_608_residues MKHQHHSISHRMTLTIIGVSSFFAVLTMLIQLIWNYQESIDNTTADIREYSESILPTVAKSLWDVDHGLLSDLLSGLGMM PMVASVNLESVDGVTIQMGKSIGAHHDAKQSLFYYPVKYQDQQIGMLIVGLDTNKLYYELWQQLIIIVLGNGLKTLIMIY LILTLVRLLVTNRLSALERFANQINLNSLPKLNVPMTVMQSSDEIGHVAQSLQAMYQRIRNDLAINKRQQRALKQQQNQL AKLVDERTQELNWQSKANQLLAEMSLQFLTTDTSKLDESLAEVCRRIGNLFDVERVSIIEFTQLHARYRSFWSCESQADL VQDIPVDIAAVLAQKFVSESTLVIESIDYLKDEFPEEYQAMCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKK VMLTQFAAALNELLLREEKERQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFK SYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQLCYQVAALEIPHKSSPKGKI TLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNTVVIDSNYK
Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]
COG id: COG3706
COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 GGDEF domains [H]
Homologues:
Organism=Escherichia coli, GI1787262, Length=245, Percent_Identity=32.2448979591837, Blast_Score=104, Evalue=2e-23, Organism=Escherichia coli, GI1787541, Length=176, Percent_Identity=31.25, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI87081881, Length=173, Percent_Identity=35.8381502890173, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1787802, Length=182, Percent_Identity=31.8681318681319, Blast_Score=82, Evalue=8e-17, Organism=Escherichia coli, GI1788956, Length=198, Percent_Identity=35.3535353535354, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1787816, Length=183, Percent_Identity=32.2404371584699, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=32.7160493827161, Blast_Score=75, Evalue=1e-14, Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=31.3609467455621, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1788085, Length=167, Percent_Identity=29.940119760479, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1788381, Length=177, Percent_Identity=29.9435028248588, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI87082007, Length=193, Percent_Identity=30.0518134715026, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI87081974, Length=162, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI87081977, Length=270, Percent_Identity=23.7037037037037, Blast_Score=65, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR003018 - InterPro: IPR016132 - InterPro: IPR001294 - InterPro: IPR013515 [H]
Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]
EC number: NA
Molecular weight: Translated: 68661; Mature: 68661
Theoretical pI: Translated: 5.52; Mature: 5.52
Prosite motif: PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKHQHHSISHRMTLTIIGVSSFFAVLTMLIQLIWNYQESIDNTTADIREYSESILPTVAK CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SLWDVDHGLLSDLLSGLGMMPMVASVNLESVDGVTIQMGKSIGAHHDAKQSLFYYPVKYQ HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECEEEC DQQIGMLIVGLDTNKLYYELWQQLIIIVLGNGLKTLIMIYLILTLVRLLVTNRLSALERF CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANQINLNSLPKLNVPMTVMQSSDEIGHVAQSLQAMYQRIRNDLAINKRQQRALKQQQNQL HHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AKLVDERTQELNWQSKANQLLAEMSLQFLTTDTSKLDESLAEVCRRIGNLFDVERVSIIE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHCCHHHHHHH FTQLHARYRSFWSCESQADLVQDIPVDIAAVLAQKFVSESTLVIESIDYLKDEFPEEYQA HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH MCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKKVMLTQFAAALNELLLREEKE HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFK HHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHH SYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQ CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH LCYQVAALEIPHKSSPKGKITLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNT HHHHHHHHCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCCE VVIDSNYK EEECCCCC >Mature Secondary Structure MKHQHHSISHRMTLTIIGVSSFFAVLTMLIQLIWNYQESIDNTTADIREYSESILPTVAK CCCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH SLWDVDHGLLSDLLSGLGMMPMVASVNLESVDGVTIQMGKSIGAHHDAKQSLFYYPVKYQ HHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECEEEC DQQIGMLIVGLDTNKLYYELWQQLIIIVLGNGLKTLIMIYLILTLVRLLVTNRLSALERF CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH ANQINLNSLPKLNVPMTVMQSSDEIGHVAQSLQAMYQRIRNDLAINKRQQRALKQQQNQL HHHCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH AKLVDERTQELNWQSKANQLLAEMSLQFLTTDTSKLDESLAEVCRRIGNLFDVERVSIIE HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHCCHHHHHHH FTQLHARYRSFWSCESQADLVQDIPVDIAAVLAQKFVSESTLVIESIDYLKDEFPEEYQA HHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHH MCSVGICSIAAYAIKNADELLGLLSLSMISRPLNWSVQKKVMLTQFAAALNELLLREEKE HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RQMLSLQQALVSVNTQLRVMADTDELTGLSNRRPFTQTLETLLQQDTPFGLLMLDVDYFK HHHHHHHHHHHHHCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEEEHHHHH SYNDTYGHLEGDAALKRVAQALTRCGILPQENLLARIGGEEFAIVLQQISPIQLEAIANQ CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHCCCHHHHHHHHHCCCHHHHHHHHH LCYQVAALEIPHKSSPKGKITLSIGGVYFPKESQDSLTLSEVLRRTDICLYRAKDQGRNT HHHHHHHHCCCCCCCCCCEEEEEECCEECCCCCCCCCHHHHHHHHHHHEEEEECCCCCCE VVIDSNYK EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231; 10978170; 11063585 [H]