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The map label for this gene is alsB [C]

Identifier: 113968699

GI number: 113968699

Start: 378221

End: 379246

Strand: Direct

Name: alsB [C]

Synonym: Shewmr4_0355

Alternate gene names: 113968699

Gene position: 378221-379246 (Clockwise)

Preceding gene: 113968669

Following gene: 113968700

Centisome position: 8.04

GC content: 42.59

Gene sequence:

>1026_bases
TTGCGTCTATGGTATTTGAGTTGTTTATTTATAGGTTTGCTGTGTTCCACGTCGCCTGCATGGGCCAAATTAGAGGTGGC
CTTTTTTAACCCAGGTGCTGCAACGGATAGCTTTTGGGGCGATGTCGATAAATTAATGGAAGTGGCTGCAACTCGGCTCG
ATATTAATTTGCAAATTATTCATTCTGACCGTAATCATTTTAAAATGATTAGTCAGTTAGATGAATTATTAAAATCTGGT
CGTTCGATTCCAACGCATATTGTTTTAGTGAATGAGAAGCAGTCAGCAATAAAAATGTTGCAGATGCTTTATGGCTATCC
CATATATGTGCAGTTGATACTGAATGATATTTCACTGGCTGAGCGGGAAACCTTATTAGCGGATCCGCATTGGCAAACCT
ATTTATTACCCGCCATTATTCCCGATAACTATGCGATTGGTGCTGAGACGGCTAAGACTCTATTAAGTGGTTTACAGGAT
AAAAAAGCTAAGGTTTTATTAATTTCGGGCGATAAGTCTACGCCCGCCTCTGTGCTACGCACTCAAGGGGCGAACGATTA
CTTTTTTATGCAACCGAATGTCACTGTGACCCAAACCGTCTATGGGCAGTGGCGCGAGGACATCGCCTATGGGCAGGCTT
TAACACTGCTCTCACGCTATCCAGATTTAAATCTAATTTGGACGGCAAGCGATAATATGGCTATGGGAGTGGTAAAGGCG
CTGCGTGAAAAGGGACTACAGCCTGGTCGTGATGTGTTAGTGAGTTCAATGAATACTTCCGCACAGATCTTAGATCTTCG
CCAATCAGAATTTGTCACCACCTTGGGGGGCGGGCATTTTTTAACGGGCGCCCTAGGATTAGTGCAGTTAAAACATTATC
AAACGACTCATCAATATTATCCCTATGCGGATATACAACTTTTTAGTGTACTCAACCCAAATTCTGATTTTTATCGAATG
TTAGTCGCTCGGGATTGGGCGGGGATTTTTCAGACGCAGATTTTGAATAAGTTGCCACAACAATAA

Upstream 100 bases:

>100_bases
TTGGATTGTGGTGCGGTGACAAGGTTGTGAGTCGAAAATAATAAAGTTACCTCCAGTGACGGAACACATTTGGGGAAACA
CCGTCGAGGAGAACTCGCCT

Downstream 100 bases:

>100_bases
GAACAATAAATAGGTATCCATGAAGCACCAACATCATTCCATCAGCCATAGAATGACACTCACTATTATTGGTGTGAGTT
CGTTTTTTGCTGTCCTGACT

Product: periplasmic binding protein/LacI transcriptional regulator

Products: ADP; phosphate; ribose [Cytoplasm]; D-allose [Cytoplasm] [C]

Alternate protein names: Sugar ABC Transporter Periplasmic Protein

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MRLWYLSCLFIGLLCSTSPAWAKLEVAFFNPGAATDSFWGDVDKLMEVAATRLDINLQIIHSDRNHFKMISQLDELLKSG
RSIPTHIVLVNEKQSAIKMLQMLYGYPIYVQLILNDISLAERETLLADPHWQTYLLPAIIPDNYAIGAETAKTLLSGLQD
KKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWREDIAYGQALTLLSRYPDLNLIWTASDNMAMGVVKA
LREKGLQPGRDVLVSSMNTSAQILDLRQSEFVTTLGGGHFLTGALGLVQLKHYQTTHQYYPYADIQLFSVLNPNSDFYRM
LVARDWAGIFQTQILNKLPQQ

Sequences:

>Translated_341_residues
MRLWYLSCLFIGLLCSTSPAWAKLEVAFFNPGAATDSFWGDVDKLMEVAATRLDINLQIIHSDRNHFKMISQLDELLKSG
RSIPTHIVLVNEKQSAIKMLQMLYGYPIYVQLILNDISLAERETLLADPHWQTYLLPAIIPDNYAIGAETAKTLLSGLQD
KKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWREDIAYGQALTLLSRYPDLNLIWTASDNMAMGVVKA
LREKGLQPGRDVLVSSMNTSAQILDLRQSEFVTTLGGGHFLTGALGLVQLKHYQTTHQYYPYADIQLFSVLNPNSDFYRM
LVARDWAGIFQTQILNKLPQQ
>Mature_341_residues
MRLWYLSCLFIGLLCSTSPAWAKLEVAFFNPGAATDSFWGDVDKLMEVAATRLDINLQIIHSDRNHFKMISQLDELLKSG
RSIPTHIVLVNEKQSAIKMLQMLYGYPIYVQLILNDISLAERETLLADPHWQTYLLPAIIPDNYAIGAETAKTLLSGLQD
KKAKVLLISGDKSTPASVLRTQGANDYFFMQPNVTVTQTVYGQWREDIAYGQALTLLSRYPDLNLIWTASDNMAMGVVKA
LREKGLQPGRDVLVSSMNTSAQILDLRQSEFVTTLGGGHFLTGALGLVQLKHYQTTHQYYPYADIQLFSVLNPNSDFYRM
LVARDWAGIFQTQILNKLPQQ

Specific function: Part Of The Binding-Protein-Dependent Transport System Alsbac For D-Allose. [C]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38356; Mature: 38356

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLWYLSCLFIGLLCSTSPAWAKLEVAFFNPGAATDSFWGDVDKLMEVAATRLDINLQII
CEEEHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHEEEEEEEE
HSDRNHFKMISQLDELLKSGRSIPTHIVLVNEKQSAIKMLQMLYGYPIYVQLILNDISLA
ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEHHHHHHHH
ERETLLADPHWQTYLLPAIIPDNYAIGAETAKTLLSGLQDKKAKVLLISGDKSTPASVLR
HHHHHCCCCCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TQGANDYFFMQPNVTVTQTVYGQWREDIAYGQALTLLSRYPDLNLIWTASDNMAMGVVKA
CCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
LREKGLQPGRDVLVSSMNTSAQILDLRQSEFVTTLGGGHFLTGALGLVQLKHYQTTHQYY
HHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCC
PYADIQLFSVLNPNSDFYRMLVARDWAGIFQTQILNKLPQQ
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRLWYLSCLFIGLLCSTSPAWAKLEVAFFNPGAATDSFWGDVDKLMEVAATRLDINLQII
CEEEHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHEEEEEEEE
HSDRNHFKMISQLDELLKSGRSIPTHIVLVNEKQSAIKMLQMLYGYPIYVQLILNDISLA
ECCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEHHHHHHHH
ERETLLADPHWQTYLLPAIIPDNYAIGAETAKTLLSGLQDKKAKVLLISGDKSTPASVLR
HHHHHCCCCCCCEEEEEEECCCCCEECHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHH
TQGANDYFFMQPNVTVTQTVYGQWREDIAYGQALTLLSRYPDLNLIWTASDNMAMGVVKA
CCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
LREKGLQPGRDVLVSSMNTSAQILDLRQSEFVTTLGGGHFLTGALGLVQLKHYQTTHQYY
HHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHCCCCC
PYADIQLFSVLNPNSDFYRMLVARDWAGIFQTQILNKLPQQ
CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; H2O; ribose [Periplasm]; D-allose [Periplasm]; ATP [C]

Specific reaction: ATP + H2O + ribose [Periplasm] = ADP + phosphate + ribose [Cytoplasm] D-allose [Periplasm] + ATP + H2O = D-allose [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA