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The map label for this gene is pobR [C]

Identifier: 116696223

GI number: 116696223

Start: 2586863

End: 2587771

Strand: Direct

Name: pobR [C]

Synonym: H16_B2287

Alternate gene names: 116696223

Gene position: 2586863-2587771 (Clockwise)

Preceding gene: 116696221

Following gene: 116696228

Centisome position: 88.82

GC content: 67.11

Gene sequence:

>909_bases
GTGAAACCTGTCCCGACGTACTCTCTGTATGGCATCAATCCCTCGGAACTGCTGGAAAACCAGCTCCATTTCGAATCCAT
TGCCGCACGCAGCCGCCTGCACGGATGGGAGATCAAGCCCCATCGGCATGATCGCTTCCTGCAAATTCTGTACATTCACT
CAGGCGCCGGCGAAGCCTTGCTGGAGGAGCGGCGCGAACGGCTGCGCAGCGGCTCGCTGGTGACGATGCCGCCACGGCAC
ATCCACGGCTTTGTCTTCACGCCGGATACCGACGGCATGGTCGTGACCATGACCGACAGCCACCTGCGCACGCTGCTGGC
GGGTGTGCCGGATGCGCTACCGCTGTTCGCCGATCCGCGCCACGACCGCGTGCGCCGGGGCCACCCGCTGGCCGATACGC
TGGCACTGGTTCGCGGCGAGATGGAAACCGTGTCCGCCTGGCGCGGGGCGTCGCTGTCGGCGTTGCTGACGCTGCTGCTG
ATCGGCATCGCGCGGCTGGCCAATGCCGCCGCGCCGGCCGCGGCGCGCAGCGACAGCCGGCCCGCGCGGCATTTCCGGCT
GTTCCAGCAGTTGCTCGAATCCGACTATCGTGAGCACAAGGACATCACGCACTATGCAAGCGCCATCGGCATCACACCCA
CGCAGCTCAACCGCGTGTGCCGCCAGGCTTGCGGGCAGTCGGCCCTGCAGATGATCCACGCGCGCGTACTGGCCGAGGCG
CAGCGCGACCTGCTGTTCAGCGACCTGGAGGTCAAGCACATCGCCCTGTCGCTCGGGTTCGCTGACGCGGCCTACTTCTC
GCGCTTCTTTGCACGGCTGGTAGGACAGGCGCCGACTGAGTTCCGGCAGTCGGGGCGTGCGCGGCTGCCGGCATTTGCGA
TGCCACCGCCCGCGGATGCGGCGGGCTGA

Upstream 100 bases:

>100_bases
TTCTGCCGCTAAAGATAGTCGGCGGAGACCCGCCAAGGAATGGACAGATCGAACCAATGACAGGACAATCGGAACATCGA
TGGTAAACACCTAAGCCACC

Downstream 100 bases:

>100_bases
CCGCTCAGCCTGCCTGGTCGATTTCGGCGAACACCTCCTCGGCCAGATGAAATGCCGAGTTCGCCGCCGGCACGCCGCAA
TAGATCGCGGCCTGCAGCAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Regulator Of 4HPA-Hydroxylase Operon; Transcriptional Regulatory Protein; PobR Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Arac Family; Transcriptional Regulator Pobr Arac Family Protein; AraC Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Transcriptional Regulatory Protein AraC-Type; AraC-Family Transcriptional Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MKPVPTYSLYGINPSELLENQLHFESIAARSRLHGWEIKPHRHDRFLQILYIHSGAGEALLEERRERLRSGSLVTMPPRH
IHGFVFTPDTDGMVVTMTDSHLRTLLAGVPDALPLFADPRHDRVRRGHPLADTLALVRGEMETVSAWRGASLSALLTLLL
IGIARLANAAAPAAARSDSRPARHFRLFQQLLESDYREHKDITHYASAIGITPTQLNRVCRQACGQSALQMIHARVLAEA
QRDLLFSDLEVKHIALSLGFADAAYFSRFFARLVGQAPTEFRQSGRARLPAFAMPPPADAAG

Sequences:

>Translated_302_residues
MKPVPTYSLYGINPSELLENQLHFESIAARSRLHGWEIKPHRHDRFLQILYIHSGAGEALLEERRERLRSGSLVTMPPRH
IHGFVFTPDTDGMVVTMTDSHLRTLLAGVPDALPLFADPRHDRVRRGHPLADTLALVRGEMETVSAWRGASLSALLTLLL
IGIARLANAAAPAAARSDSRPARHFRLFQQLLESDYREHKDITHYASAIGITPTQLNRVCRQACGQSALQMIHARVLAEA
QRDLLFSDLEVKHIALSLGFADAAYFSRFFARLVGQAPTEFRQSGRARLPAFAMPPPADAAG
>Mature_302_residues
MKPVPTYSLYGINPSELLENQLHFESIAARSRLHGWEIKPHRHDRFLQILYIHSGAGEALLEERRERLRSGSLVTMPPRH
IHGFVFTPDTDGMVVTMTDSHLRTLLAGVPDALPLFADPRHDRVRRGHPLADTLALVRGEMETVSAWRGASLSALLTLLL
IGIARLANAAAPAAARSDSRPARHFRLFQQLLESDYREHKDITHYASAIGITPTQLNRVCRQACGQSALQMIHARVLAEA
QRDLLFSDLEVKHIALSLGFADAAYFSRFFARLVGQAPTEFRQSGRARLPAFAMPPPADAAG

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33541; Mature: 33541

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVPTYSLYGINPSELLENQLHFESIAARSRLHGWEIKPHRHDRFLQILYIHSGAGEAL
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHH
LEERRERLRSGSLVTMPPRHIHGFVFTPDTDGMVVTMTDSHLRTLLAGVPDALPLFADPR
HHHHHHHHHCCCEEEECHHHHEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCC
HDRVRRGHPLADTLALVRGEMETVSAWRGASLSALLTLLLIGIARLANAAAPAAARSDSR
HHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
PARHFRLFQQLLESDYREHKDITHYASAIGITPTQLNRVCRQACGQSALQMIHARVLAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRDLLFSDLEVKHIALSLGFADAAYFSRFFARLVGQAPTEFRQSGRARLPAFAMPPPADA
HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCC
AG
CC
>Mature Secondary Structure
MKPVPTYSLYGINPSELLENQLHFESIAARSRLHGWEIKPHRHDRFLQILYIHSGAGEAL
CCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCHHH
LEERRERLRSGSLVTMPPRHIHGFVFTPDTDGMVVTMTDSHLRTLLAGVPDALPLFADPR
HHHHHHHHHCCCEEEECHHHHEEEEECCCCCCEEEEECHHHHHHHHHCCCCCCCCCCCCC
HDRVRRGHPLADTLALVRGEMETVSAWRGASLSALLTLLLIGIARLANAAAPAAARSDSR
HHHHHCCCCHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCHHHCCCCC
PARHFRLFQQLLESDYREHKDITHYASAIGITPTQLNRVCRQACGQSALQMIHARVLAEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QRDLLFSDLEVKHIALSLGFADAAYFSRFFARLVGQAPTEFRQSGRARLPAFAMPPPADA
HHHHHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCC
AG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA