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The map label for this gene is yvoA [H]

Identifier: 116696177

GI number: 116696177

Start: 2540378

End: 2541214

Strand: Direct

Name: yvoA [H]

Synonym: H16_B2241

Alternate gene names: 116696177

Gene position: 2540378-2541214 (Clockwise)

Preceding gene: 116696175

Following gene: 116696178

Centisome position: 87.22

GC content: 67.03

Gene sequence:

>837_bases
GTGGTACCCGTCCCCGCCGCCGCAGCCATGCCGGCACCGATCCCGCTGCCGCTCTATACGCAAATCAAGGACGCCTTGCG
CGCCAGCATCCTGGACGGCACCTATCCGCCGCACCACCAGATGCCGTCGGAAAGCGAGCTGGGCGAGCGCTTTCGCGCCA
GCCGCATCACCGTGCGCCAGGCGCTGGGCGACCTGCAGAAGGAGGGGCTGATCTTCAAGATCCATGGCAAGGGCACCTTC
GTCTCCAAGCCCCGCGCCTTCCAGAACGTGACTTCGCTGCAAGGCTTTGCCGAGGCCATGTCGAGCATGGGCTACGAGAT
CCTGAACCAGATACGCAACTGCAAATGCGTACCTGCCAGCCGTCACGTTGCCACGCAACTGCGGCTGCGCGAAGGCGATC
CGGTGGTGGAGATCCGGCGCGTGCGCCTGCTCAACCGCGAGCCGGTGTCGCTGGAGCTGACCTGGGTGTCCGAGGCCGTC
GGCCGCCGCCTGCTCACTGCCGACCTGGCCACGCGCGACATCTTCCTGATCCTGGAAAACGACTGTGGCGTGAAGCTCGG
CCATGCCGACCTGAGTGTCGACGCCATCCTCGCCGACGACGAGCTGACCCAGGCCCTGCGCATCGAGGAAGGCGCGCCGG
TGCTGCGCATCGAACGCCTGACCCATGACGCGCAAGGCACGCCTATCGATTACGAGTTCCTCTACTTCCGCGGCGACGCG
TTCCAGTACCGGCTGCGCGCAGACCGGCACAAGACCGCGCCAGCCGCCAGCGTCACCAGCCCAGCCGGCCATGCACGGCC
CCGCAAACCAGCCAGCAAGGGGAAGCCCTCCGCATGA

Upstream 100 bases:

>100_bases
TATCCGGATTGCTTCGTTCCTCCGGCGCAGCGTCGTCCATATAGTGGTTCCCAACTTGTCATAACACGCTATGTCGATCC
CCATGACGACCCGGACCAAC

Downstream 100 bases:

>100_bases
ATACCCTGACTCACGAATACGACATCGTTGTCGTCGGCGGCGGCACCGCCGGCCCGATGGCCGCGATCAAGGCCAAGGAA
CGCAACCCCGCGCTGCGCGT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MVPVPAAAAMPAPIPLPLYTQIKDALRASILDGTYPPHHQMPSESELGERFRASRITVRQALGDLQKEGLIFKIHGKGTF
VSKPRAFQNVTSLQGFAEAMSSMGYEILNQIRNCKCVPASRHVATQLRLREGDPVVEIRRVRLLNREPVSLELTWVSEAV
GRRLLTADLATRDIFLILENDCGVKLGHADLSVDAILADDELTQALRIEEGAPVLRIERLTHDAQGTPIDYEFLYFRGDA
FQYRLRADRHKTAPAASVTSPAGHARPRKPASKGKPSA

Sequences:

>Translated_278_residues
MVPVPAAAAMPAPIPLPLYTQIKDALRASILDGTYPPHHQMPSESELGERFRASRITVRQALGDLQKEGLIFKIHGKGTF
VSKPRAFQNVTSLQGFAEAMSSMGYEILNQIRNCKCVPASRHVATQLRLREGDPVVEIRRVRLLNREPVSLELTWVSEAV
GRRLLTADLATRDIFLILENDCGVKLGHADLSVDAILADDELTQALRIEEGAPVLRIERLTHDAQGTPIDYEFLYFRGDA
FQYRLRADRHKTAPAASVTSPAGHARPRKPASKGKPSA
>Mature_278_residues
MVPVPAAAAMPAPIPLPLYTQIKDALRASILDGTYPPHHQMPSESELGERFRASRITVRQALGDLQKEGLIFKIHGKGTF
VSKPRAFQNVTSLQGFAEAMSSMGYEILNQIRNCKCVPASRHVATQLRLREGDPVVEIRRVRLLNREPVSLELTWVSEAV
GRRLLTADLATRDIFLILENDCGVKLGHADLSVDAILADDELTQALRIEEGAPVLRIERLTHDAQGTPIDYEFLYFRGDA
FQYRLRADRHKTAPAASVTSPAGHARPRKPASKGKPSA

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=231, Percent_Identity=28.1385281385281, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1786950, Length=233, Percent_Identity=27.4678111587983, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082252, Length=233, Percent_Identity=23.175965665236, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788418, Length=227, Percent_Identity=24.6696035242291, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 30716; Mature: 30716

Theoretical pI: Translated: 9.41; Mature: 9.41

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVPVPAAAAMPAPIPLPLYTQIKDALRASILDGTYPPHHQMPSESELGERFRASRITVRQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ALGDLQKEGLIFKIHGKGTFVSKPRAFQNVTSLQGFAEAMSSMGYEILNQIRNCKCVPAS
HHHHHHHCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
RHVATQLRLREGDPVVEIRRVRLLNREPVSLELTWVSEAVGRRLLTADLATRDIFLILEN
HHHHHHEEECCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHCHHHHHHHHCCCEEEEEEEC
DCGVKLGHADLSVDAILADDELTQALRIEEGAPVLRIERLTHDAQGTPIDYEFLYFRGDA
CCCEEECCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCEEEEEEECCC
FQYRLRADRHKTAPAASVTSPAGHARPRKPASKGKPSA
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVPVPAAAAMPAPIPLPLYTQIKDALRASILDGTYPPHHQMPSESELGERFRASRITVRQ
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
ALGDLQKEGLIFKIHGKGTFVSKPRAFQNVTSLQGFAEAMSSMGYEILNQIRNCKCVPAS
HHHHHHHCCEEEEECCCCEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC
RHVATQLRLREGDPVVEIRRVRLLNREPVSLELTWVSEAVGRRLLTADLATRDIFLILEN
HHHHHHEEECCCCCHHHHHHHHHHCCCCCEEEEEEHHHHHCHHHHHHHHCCCEEEEEEEC
DCGVKLGHADLSVDAILADDELTQALRIEEGAPVLRIERLTHDAQGTPIDYEFLYFRGDA
CCCEEECCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEEHHCCCCCCCCCEEEEEEECCC
FQYRLRADRHKTAPAASVTSPAGHARPRKPASKGKPSA
EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]