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The map label for this gene is yfdE [H]

Identifier: 116694919

GI number: 116694919

Start: 1097090

End: 1098286

Strand: Direct

Name: yfdE [H]

Synonym: H16_B0974

Alternate gene names: 116694919

Gene position: 1097090-1098286 (Clockwise)

Preceding gene: 116694917

Following gene: 116694920

Centisome position: 37.67

GC content: 69.42

Gene sequence:

>1197_bases
GTGACTCATTCCGACCTGCCGCTTGCCGGCATCCGCGTGATCGATTTCTCGCGCGTGCTGGCGGGCCCTTACTGCACGGC
GCTGCTCGGCGACCTTGGCGCAGAGGTGATCAAGATCGAACCGCCTGGCGGCGATGACTACCGCGCGGTCGGTCCCTTCG
TCGATGGCAAGAGCGGTCTGTTCTCTGCCATGAACCGCAACAAGCAGAGCATCGTGATCGACCTGAAGACGGCAGCGGGC
CTGGAGCTGGCGCGCTCGCTCTGCGCCCGGGCCGACGTGGTGGTCGAGAACTTCCGCCCGGGTGTCGCGGACAAGCTGGG
CATCGGCTATGAGGCGCTGCGTGCGCTGAATCCGCCGGTGGTCTACGCCAGCGTGTCGGGCTTCGGCCAGACCGGGCCGG
AATCGCACCGTCCGGCCTACGACATCATCCTGCAGGCAATGTGCGGGCTGATGGATGCCACCGGCGCCCCGGACGGCACC
CCGACCATGCTGGGCGAGGCCGTCTCCGATGCGGTCAGCGGCCTGTTCGCCTCATGGGGCGTGCTGGCCGCGCTGCTGGC
GCGCGAGAAGACCGGGCGGGGCACGCATGTCGATGTCTCGATGTTCGACGCCACCCTGAGCCTGAGCGCCACCCTGGTCG
CGCGCTATGCCGCGACCGGCCTGGCGCCGCTGCGCGTCGGCAACCGCCATCCCTCGTCCGCGCCGTTCGGCGTGTACCGC
GCCGCGGACGGCTTCTATGTGGTGGCGGTGCTGAACAACAAGCTGTTCCAGGCGCTGGCCAATGCCATCGGCCGGCCGGA
GATGGCGCAGGACCCGCGCTTTGCCGACGACGAGACGCGCTGCCGCTTCGAGGGCGATCTGCGCGCCGGTCTCGAAGCCT
GGTCGGCCAGCCGTTCCGTGGCCGAGGTGAACCGCCTGCTGAGCGAGGCGGGCATCCCTGTCGCGCCTATCCGCAACGTC
AAGGAAGCCCTGGAGAGCGACCATGCCGCCCACCGCGGCCTGCTTGCCGAAGTGCCCGGGCCGGAGGGCGGCACCGTGCG
GTTGCCGTCGCAGCCGGTGAAGTTCTCCGGCTACGGCGCCAACCGCGTGACGCCCGCGCCGGCGCTGGGGCAGCACACCG
AAGCCATCCTGGCCGAGCTGGCCAACGCTGCCACGGCGCATCCGCAAGTGTTCAGCAAGGAGAAACAACATGCATAA

Upstream 100 bases:

>100_bases
GTGCTAGTCGAATTCAATATTTTACTTGATAGCCTGCGCTGCGCAGAATCGGTGTCACTGAAACGCAAGCCCGCGGGTTT
GCAAGCCTGGAGGCCAAGAC

Downstream 100 bases:

>100_bases
ACGACTGGGCGTAGAGCCGGGCGATCTTGAGATTGCCGATGCCATCGGACGCTTCGCGCAAAGCGAACTGGCGCCGAAGG
CGGCCGAGGTGGACCGGGCC

Product: acyl-CoA transferase/carnitine dehydratase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MTHSDLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGKSGLFSAMNRNKQSIVIDLKTAAG
LELARSLCARADVVVENFRPGVADKLGIGYEALRALNPPVVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGT
PTMLGEAVSDAVSGLFASWGVLAALLAREKTGRGTHVDVSMFDATLSLSATLVARYAATGLAPLRVGNRHPSSAPFGVYR
AADGFYVVAVLNNKLFQALANAIGRPEMAQDPRFADDETRCRFEGDLRAGLEAWSASRSVAEVNRLLSEAGIPVAPIRNV
KEALESDHAAHRGLLAEVPGPEGGTVRLPSQPVKFSGYGANRVTPAPALGQHTEAILAELANAATAHPQVFSKEKQHA

Sequences:

>Translated_398_residues
MTHSDLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGKSGLFSAMNRNKQSIVIDLKTAAG
LELARSLCARADVVVENFRPGVADKLGIGYEALRALNPPVVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGT
PTMLGEAVSDAVSGLFASWGVLAALLAREKTGRGTHVDVSMFDATLSLSATLVARYAATGLAPLRVGNRHPSSAPFGVYR
AADGFYVVAVLNNKLFQALANAIGRPEMAQDPRFADDETRCRFEGDLRAGLEAWSASRSVAEVNRLLSEAGIPVAPIRNV
KEALESDHAAHRGLLAEVPGPEGGTVRLPSQPVKFSGYGANRVTPAPALGQHTEAILAELANAATAHPQVFSKEKQHA
>Mature_397_residues
THSDLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGKSGLFSAMNRNKQSIVIDLKTAAGL
ELARSLCARADVVVENFRPGVADKLGIGYEALRALNPPVVYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGTP
TMLGEAVSDAVSGLFASWGVLAALLAREKTGRGTHVDVSMFDATLSLSATLVARYAATGLAPLRVGNRHPSSAPFGVYRA
ADGFYVVAVLNNKLFQALANAIGRPEMAQDPRFADDETRCRFEGDLRAGLEAWSASRSVAEVNRLLSEAGIPVAPIRNVK
EALESDHAAHRGLLAEVPGPEGGTVRLPSQPVKFSGYGANRVTPAPALGQHTEAILAELANAATAHPQVFSKEKQHA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=35.3723404255319, Blast_Score=262, Evalue=3e-70,
Organism=Homo sapiens, GI300863124, Length=402, Percent_Identity=33.3333333333333, Blast_Score=249, Evalue=2e-66,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=31.6489361702128, Blast_Score=207, Evalue=1e-53,
Organism=Homo sapiens, GI13376042, Length=402, Percent_Identity=29.8507462686567, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI42794625, Length=378, Percent_Identity=29.1005291005291, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI266456254, Length=378, Percent_Identity=29.1005291005291, Blast_Score=149, Evalue=4e-36,
Organism=Homo sapiens, GI266458393, Length=262, Percent_Identity=33.587786259542, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266458397, Length=257, Percent_Identity=33.852140077821, Blast_Score=133, Evalue=2e-31,
Organism=Homo sapiens, GI42822893, Length=144, Percent_Identity=38.1944444444444, Blast_Score=100, Evalue=3e-21,
Organism=Homo sapiens, GI266458395, Length=144, Percent_Identity=38.1944444444444, Blast_Score=100, Evalue=4e-21,
Organism=Escherichia coli, GI87082093, Length=378, Percent_Identity=42.0634920634921, Blast_Score=305, Evalue=4e-84,
Organism=Escherichia coli, GI1788717, Length=399, Percent_Identity=33.3333333333333, Blast_Score=190, Evalue=2e-49,
Organism=Escherichia coli, GI1786222, Length=396, Percent_Identity=28.030303030303, Blast_Score=123, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI115535051, Length=295, Percent_Identity=27.4576271186441, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=295, Percent_Identity=26.4406779661017, Blast_Score=97, Evalue=1e-20,
Organism=Drosophila melanogaster, GI24648431, Length=378, Percent_Identity=37.8306878306878, Blast_Score=259, Evalue=3e-69,
Organism=Drosophila melanogaster, GI24585488, Length=330, Percent_Identity=28.4848484848485, Blast_Score=125, Evalue=5e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41786; Mature: 41655

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHSDLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGKSGL
CCCCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHH
FSAMNRNKQSIVIDLKTAAGLELARSLCARADVVVENFRPGVADKLGIGYEALRALNPPV
HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCE
VYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGTPTMLGEAVSDAVSGLFASWG
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VLAALLAREKTGRGTHVDVSMFDATLSLSATLVARYAATGLAPLRVGNRHPSSAPFGVYR
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEE
AADGFYVVAVLNNKLFQALANAIGRPEMAQDPRFADDETRCRFEGDLRAGLEAWSASRSV
CCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHH
AEVNRLLSEAGIPVAPIRNVKEALESDHAAHRGLLAEVPGPEGGTVRLPSQPVKFSGYGA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCEECCCCC
NRVTPAPALGQHTEAILAELANAATAHPQVFSKEKQHA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCC
>Mature Secondary Structure 
THSDLPLAGIRVIDFSRVLAGPYCTALLGDLGAEVIKIEPPGGDDYRAVGPFVDGKSGL
CCCCCCCCCEEEEEHHHHHCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCHHH
FSAMNRNKQSIVIDLKTAAGLELARSLCARADVVVENFRPGVADKLGIGYEALRALNPPV
HHHHCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHCCCCE
VYASVSGFGQTGPESHRPAYDIILQAMCGLMDATGAPDGTPTMLGEAVSDAVSGLFASWG
EEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
VLAALLAREKTGRGTHVDVSMFDATLSLSATLVARYAATGLAPLRVGNRHPSSAPFGVYR
HHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEE
AADGFYVVAVLNNKLFQALANAIGRPEMAQDPRFADDETRCRFEGDLRAGLEAWSASRSV
CCCCEEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCHHH
AEVNRLLSEAGIPVAPIRNVKEALESDHAAHRGLLAEVPGPEGGTVRLPSQPVKFSGYGA
HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCCEEECCCCCCEECCCCC
NRVTPAPALGQHTEAILAELANAATAHPQVFSKEKQHA
CCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]