| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478288
Identifier: 113478288
GI number: 113478288
Start: 7565852
End: 7566799
Strand: Reverse
Name: 113478288
Synonym: Tery_4962
Alternate gene names: NA
Gene position: 7566799-7565852 (Counterclockwise)
Preceding gene: 113478289
Following gene: 113478287
Centisome position: 97.63
GC content: 38.29
Gene sequence:
>948_bases ATGCATAATTCGTCTTTGGGTGAGGAAGGTCAAAATTTTCAGTCGGCAAAAGAAGACTACTATAAAAAGTTAGCAGGGTG GAAACAACAAGATGAGGATGAGAGGGAAAGGCCTAACAGGGAAATAGATGAGAGGCGATCGCTTGATCATATCCGTCAGC TTGCGTCGTTGAGGTTTAAGCATTTTTATAAGGCAGGGGAAACTCGAGAAAGAAAGTTAGAAACTGAGAATGAGTTGGCA CGGTTGAAACAAGAATATCCGGAGTTTTTGAGGAAGGGTATTAGGACAACTCTTGGTTATTTTTTTATGCTGTCGTTTTT TATTGCTGTTTTGGTGATCAATTTTGTTTTAATTAAACAACCTGTGGAATATTTGGCGTCCCAGGCATTTCCTCCAGGGT CTTTTGCTGTTACTGTTGCGGCTATATTGTTGCCTTTTGTTATTGTTTTGTTTGAGTTGGGGGTTTGTTCTCAGTTGTTT TCGGCTCAAATGTCTCCTTCTTCTCGTGATGAAGTTATACTTTGGCAAAGGCTGGCTAATACTATTGTTTGGGTAACTCC GGCGATGTTGCTTGGTACTTCTGTTGCTCTCTATACTGGGGAGGAGTGGCCTCCTGAGTTGTATGAAATAATTTTGTTGT TGGCGATGGGAATTTTGGCTTATGTGACTGATGCTGGTGTGGTTTATGGTTACGATCGCTATCAAAATGCTTTTGCTTTT TTTTGGTTTAGAATTAACTATTTACGTCGGCAATATAAGTTGCGCAGATACAAGAGGATTTTTTATCAGGAAAAATATCA TTTTACTCATGCTTGTAAAAATTATGAGGCGGCGGTTAATTACCATAATCAAAATTTTACAAGTAAGGTTACGTTTGTGC CTATTAATGTTTATTTTGATGATGTTTATTATGAGCAGTTGTCTATATCTGGAAAACCATCAAGTTGA
Upstream 100 bases:
>100_bases GTAAGGGGATATTTGAAAATATTGAGCACAAGGCTTTTGAGTCTGTACCTGCTGCTTTTCGGTATTTGGTTACTCAGGTG AATAAGGGAGAAAATTGAGT
Downstream 100 bases:
>100_bases GGTTGGTTTTGGTATTATTTTTTGTTTTCTGGTTTTGGTTTTTCTGCCTAAAATTCAGGGTTGATAGGGCAATTTCTCAA GTGCGGGTGTCTTTTCTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 315; Mature: 315
Protein sequence:
>315_residues MHNSSLGEEGQNFQSAKEDYYKKLAGWKQQDEDERERPNREIDERRSLDHIRQLASLRFKHFYKAGETRERKLETENELA RLKQEYPEFLRKGIRTTLGYFFMLSFFIAVLVINFVLIKQPVEYLASQAFPPGSFAVTVAAILLPFVIVLFELGVCSQLF SAQMSPSSRDEVILWQRLANTIVWVTPAMLLGTSVALYTGEEWPPELYEIILLLAMGILAYVTDAGVVYGYDRYQNAFAF FWFRINYLRRQYKLRRYKRIFYQEKYHFTHACKNYEAAVNYHNQNFTSKVTFVPINVYFDDVYYEQLSISGKPSS
Sequences:
>Translated_315_residues MHNSSLGEEGQNFQSAKEDYYKKLAGWKQQDEDERERPNREIDERRSLDHIRQLASLRFKHFYKAGETRERKLETENELA RLKQEYPEFLRKGIRTTLGYFFMLSFFIAVLVINFVLIKQPVEYLASQAFPPGSFAVTVAAILLPFVIVLFELGVCSQLF SAQMSPSSRDEVILWQRLANTIVWVTPAMLLGTSVALYTGEEWPPELYEIILLLAMGILAYVTDAGVVYGYDRYQNAFAF FWFRINYLRRQYKLRRYKRIFYQEKYHFTHACKNYEAAVNYHNQNFTSKVTFVPINVYFDDVYYEQLSISGKPSS >Mature_315_residues MHNSSLGEEGQNFQSAKEDYYKKLAGWKQQDEDERERPNREIDERRSLDHIRQLASLRFKHFYKAGETRERKLETENELA RLKQEYPEFLRKGIRTTLGYFFMLSFFIAVLVINFVLIKQPVEYLASQAFPPGSFAVTVAAILLPFVIVLFELGVCSQLF SAQMSPSSRDEVILWQRLANTIVWVTPAMLLGTSVALYTGEEWPPELYEIILLLAMGILAYVTDAGVVYGYDRYQNAFAF FWFRINYLRRQYKLRRYKRIFYQEKYHFTHACKNYEAAVNYHNQNFTSKVTFVPINVYFDDVYYEQLSISGKPSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37047; Mature: 37047
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHNSSLGEEGQNFQSAKEDYYKKLAGWKQQDEDERERPNREIDERRSLDHIRQLASLRFK CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH HFYKAGETRERKLETENELARLKQEYPEFLRKGIRTTLGYFFMLSFFIAVLVINFVLIKQ HHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVEYLASQAFPPGSFAVTVAAILLPFVIVLFELGVCSQLFSAQMSPSSRDEVILWQRLAN HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TIVWVTPAMLLGTSVALYTGEEWPPELYEIILLLAMGILAYVTDAGVVYGYDRYQNAFAF HHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH FWFRINYLRRQYKLRRYKRIFYQEKYHFTHACKNYEAAVNYHNQNFTSKVTFVPINVYFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEEEEEEEEH DVYYEQLSISGKPSS HHHHHHHCCCCCCCC >Mature Secondary Structure MHNSSLGEEGQNFQSAKEDYYKKLAGWKQQDEDERERPNREIDERRSLDHIRQLASLRFK CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHH HFYKAGETRERKLETENELARLKQEYPEFLRKGIRTTLGYFFMLSFFIAVLVINFVLIKQ HHHHCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PVEYLASQAFPPGSFAVTVAAILLPFVIVLFELGVCSQLFSAQMSPSSRDEVILWQRLAN HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH TIVWVTPAMLLGTSVALYTGEEWPPELYEIILLLAMGILAYVTDAGVVYGYDRYQNAFAF HHHHHHHHHHHHCCHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHH FWFRINYLRRQYKLRRYKRIFYQEKYHFTHACKNYEAAVNYHNQNFTSKVTFVPINVYFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCCCCEEEEEEEEEEEH DVYYEQLSISGKPSS HHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA