Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113478287

Identifier: 113478287

GI number: 113478287

Start: 7564768

End: 7565499

Strand: Reverse

Name: 113478287

Synonym: Tery_4961

Alternate gene names: NA

Gene position: 7565499-7564768 (Counterclockwise)

Preceding gene: 113478288

Following gene: 113478286

Centisome position: 97.62

GC content: 35.52

Gene sequence:

>732_bases
ATGGTAATATCAAAATATGTCTCTCTAACTCAAGTTTATAATGAAATGGCTGATAATGATTTACTCTGTGGAGCGATCGC
TAATTTCTGTGGGGAAACTCCAGGAAGCCAGGAATGGCATAGAGCTTTTGATGTTTTATGGACCGGAATTTTAAAGTCTA
AAATACTTGCTACATCTCAACACCCAAAGTACCCAGATTTGTTACAAGAGATTCAGTTAGAATTGTCTCAAAGAATATGT
CAGGAGTTTGACCCAAAAAGGGGAAAAAATTTCTTACATAGTTTGAGATTATGGATTAATTATAGAAAGAATAATTATGG
TTTGGGTCTTAGATACAGAATTCTTGATTTATATCAGGAATATAAGCAAAAAGCTCAGAGGGAAGCTTCTCTTGATGCAC
CCATTTATGGTGGGAATAATGATTTAAATATACCTACTTTAGAAGATGTTATTGCTGGTAATTTTCCGGAACCGATGGAA
AGTTTAAGTCAACAAGATTTTGGGGATAAACTATCAGCAGAAGTTCAAAAGTTGGGTTGTCATCCTAAAAAATATCCTCA
ATGTACTTGTGGGGAAATTGCTCGACGGAATTTCTTCATGGATCCTCCCCAAATACAGAAGGATATTGCGGAAGAATTAA
AGGTACCTCTGGGAACTTTGACGGCTCATTGGAACAGAAAGTGTAAACCACTTTTGCGGAAAATTTATCAAGAACTTTCA
GGAGAAAAATAA

Upstream 100 bases:

>100_bases
TTTGATAAATGAGATTATTTTGTGGGGTTTTGTACTTCAAGAATACTGACTATTTTTAGGAAAAATTAAGATTTTTTATG
GTACAGTTGGAATTAATTAA

Downstream 100 bases:

>100_bases
TGACTATTACAGATAATGATGCTATTAATATTCCTATCCCTATGGAGGCTCATAGTTCTGCTCAAAAGTTTGCGGCTCAA
CAACCTAATTCGGAAAAAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC
QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME
SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS
GEK

Sequences:

>Translated_243_residues
MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC
QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME
SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS
GEK
>Mature_243_residues
MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC
QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME
SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS
GEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27996; Mature: 27996

Theoretical pI: Translated: 7.76; Mature: 7.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCC
>Mature Secondary Structure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CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA