| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478287
Identifier: 113478287
GI number: 113478287
Start: 7564768
End: 7565499
Strand: Reverse
Name: 113478287
Synonym: Tery_4961
Alternate gene names: NA
Gene position: 7565499-7564768 (Counterclockwise)
Preceding gene: 113478288
Following gene: 113478286
Centisome position: 97.62
GC content: 35.52
Gene sequence:
>732_bases ATGGTAATATCAAAATATGTCTCTCTAACTCAAGTTTATAATGAAATGGCTGATAATGATTTACTCTGTGGAGCGATCGC TAATTTCTGTGGGGAAACTCCAGGAAGCCAGGAATGGCATAGAGCTTTTGATGTTTTATGGACCGGAATTTTAAAGTCTA AAATACTTGCTACATCTCAACACCCAAAGTACCCAGATTTGTTACAAGAGATTCAGTTAGAATTGTCTCAAAGAATATGT CAGGAGTTTGACCCAAAAAGGGGAAAAAATTTCTTACATAGTTTGAGATTATGGATTAATTATAGAAAGAATAATTATGG TTTGGGTCTTAGATACAGAATTCTTGATTTATATCAGGAATATAAGCAAAAAGCTCAGAGGGAAGCTTCTCTTGATGCAC CCATTTATGGTGGGAATAATGATTTAAATATACCTACTTTAGAAGATGTTATTGCTGGTAATTTTCCGGAACCGATGGAA AGTTTAAGTCAACAAGATTTTGGGGATAAACTATCAGCAGAAGTTCAAAAGTTGGGTTGTCATCCTAAAAAATATCCTCA ATGTACTTGTGGGGAAATTGCTCGACGGAATTTCTTCATGGATCCTCCCCAAATACAGAAGGATATTGCGGAAGAATTAA AGGTACCTCTGGGAACTTTGACGGCTCATTGGAACAGAAAGTGTAAACCACTTTTGCGGAAAATTTATCAAGAACTTTCA GGAGAAAAATAA
Upstream 100 bases:
>100_bases TTTGATAAATGAGATTATTTTGTGGGGTTTTGTACTTCAAGAATACTGACTATTTTTAGGAAAAATTAAGATTTTTTATG GTACAGTTGGAATTAATTAA
Downstream 100 bases:
>100_bases TGACTATTACAGATAATGATGCTATTAATATTCCTATCCCTATGGAGGCTCATAGTTCTGCTCAAAAGTTTGCGGCTCAA CAACCTAATTCGGAAAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS GEK
Sequences:
>Translated_243_residues MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS GEK >Mature_243_residues MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQHPKYPDLLQEIQLELSQRIC QEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQEYKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPME SLSQQDFGDKLSAEVQKLGCHPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS GEK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27996; Mature: 27996
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQ CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC HPKYPDLLQEIQLELSQRICQEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQE CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH YKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPMESLSQQDFGDKLSAEVQKLGC HHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCC HPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS CCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHC GEK CCC >Mature Secondary Structure MVISKYVSLTQVYNEMADNDLLCGAIANFCGETPGSQEWHRAFDVLWTGILKSKILATSQ CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC HPKYPDLLQEIQLELSQRICQEFDPKRGKNFLHSLRLWINYRKNNYGLGLRYRILDLYQE CCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH YKQKAQREASLDAPIYGGNNDLNIPTLEDVIAGNFPEPMESLSQQDFGDKLSAEVQKLGC HHHHHHHHHCCCCCEECCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHHHCC HPKKYPQCTCGEIARRNFFMDPPQIQKDIAEELKVPLGTLTAHWNRKCKPLLRKIYQELS CCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHC GEK CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA