| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113478005
Identifier: 113478005
GI number: 113478005
Start: 7099417
End: 7100196
Strand: Reverse
Name: 113478005
Synonym: Tery_4620
Alternate gene names: NA
Gene position: 7100196-7099417 (Counterclockwise)
Preceding gene: 113478006
Following gene: 113478004
Centisome position: 91.61
GC content: 38.33
Gene sequence:
>780_bases ATGCACTTAACTTGGTTAGACAGTAATTCCTGGCTAATTGAAATTAGAAGTAAACAAATACTCATAGATCCTTGGCTCGT TGGCCCCCTAGTTTTCGGAAATCTATCTTGGTTGTTTAAAGGAGAAAGACTCACACCCCGTAATATTCCAGAAAAAGTAG ACCTTATTGTATTATCTCAAGGACTAGAAGACCACGCTCACCCAGAAACTCTTAAGCAGCTAGACAAAAACATTCCTGTT GTTGCCTCTCCGGCCGCAGCAAAAGTAGTGCAAGAGTTAGGTTACTCTCAAGTAATTACACTTGAGCATGGCCATACCTA TGCTTTTGAAAATAGCATTGAAATTAGAGCAGTTCCCGGCTCACTAGTGGGCCCAACTTTAGTAGAAAATGGTTATATTC TCAAAGACCTGAGCACTGGGAACACAATATATTATGAGCCCCATGGCAGCCATTCTGAAAAAATCAAAGAATTTGCACCT GTAGATGTTGTCATTTCCCCAGTTATCAGTTTGAACTTACCATTAGTCGGGCCAATAATTAAAGGAAATGAAAGTGCATT ACAAGTAGCTCAATGGTTAGAACCTCAAATTATGCTACCTACAGCAGCAGGGGGCGATATAGACTTTCAAGGACTATTAA TATTTTTCCTCAAAGAAAAAGGAAATATTAAAGAAATACAGTCTCAGTTGGTTAAAAGTAATTTAGCAACAAAAATTATC GAACCCAAACCAGGAGAACGTTTTGAATTGGAGTTAGAAGAACGAGTATTAACTCATTAG
Upstream 100 bases:
>100_bases ATCATTACCCAATATTTTCCCCTGTCATAACCCCCCTACTTACTGCCTTTGTAATAAATCGTTACAATAATAATGATAAA GCGTAACTCATATAAACACT
Downstream 100 bases:
>100_bases TATTAATTTGTTTTAGCCAATATCTTTCAAAAGTTTCTTAATATTGAAAGTTATTGGCTATGATCAGCATTTAGTCCTCA GCTAGCCTCCTTGGTCGGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 259; Mature: 259
Protein sequence:
>259_residues MHLTWLDSNSWLIEIRSKQILIDPWLVGPLVFGNLSWLFKGERLTPRNIPEKVDLIVLSQGLEDHAHPETLKQLDKNIPV VASPAAAKVVQELGYSQVITLEHGHTYAFENSIEIRAVPGSLVGPTLVENGYILKDLSTGNTIYYEPHGSHSEKIKEFAP VDVVISPVISLNLPLVGPIIKGNESALQVAQWLEPQIMLPTAAGGDIDFQGLLIFFLKEKGNIKEIQSQLVKSNLATKII EPKPGERFELELEERVLTH
Sequences:
>Translated_259_residues MHLTWLDSNSWLIEIRSKQILIDPWLVGPLVFGNLSWLFKGERLTPRNIPEKVDLIVLSQGLEDHAHPETLKQLDKNIPV VASPAAAKVVQELGYSQVITLEHGHTYAFENSIEIRAVPGSLVGPTLVENGYILKDLSTGNTIYYEPHGSHSEKIKEFAP VDVVISPVISLNLPLVGPIIKGNESALQVAQWLEPQIMLPTAAGGDIDFQGLLIFFLKEKGNIKEIQSQLVKSNLATKII EPKPGERFELELEERVLTH >Mature_259_residues MHLTWLDSNSWLIEIRSKQILIDPWLVGPLVFGNLSWLFKGERLTPRNIPEKVDLIVLSQGLEDHAHPETLKQLDKNIPV VASPAAAKVVQELGYSQVITLEHGHTYAFENSIEIRAVPGSLVGPTLVENGYILKDLSTGNTIYYEPHGSHSEKIKEFAP VDVVISPVISLNLPLVGPIIKGNESALQVAQWLEPQIMLPTAAGGDIDFQGLLIFFLKEKGNIKEIQSQLVKSNLATKII EPKPGERFELELEERVLTH
Specific function: Unknown
COG id: COG2220
COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28798; Mature: 28798
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHLTWLDSNSWLIEIRSKQILIDPWLVGPLVFGNLSWLFKGERLTPRNIPEKVDLIVLSQ CEEEEECCCCEEEEEECCEEEECCHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEEC GLEDHAHPETLKQLDKNIPVVASPAAAKVVQELGYSQVITLEHGHTYAFENSIEIRAVPG CCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHCCCCEEEEEECCCEEEECCCEEEEECCC SLVGPTLVENGYILKDLSTGNTIYYEPHGSHSEKIKEFAPVDVVISPVISLNLPLVGPII CCCCCHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHCCHHHEEECHHHCCCCEECCEE KGNESALQVAQWLEPQIMLPTAAGGDIDFQGLLIFFLKEKGNIKEIQSQLVKSNLATKII CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEE EPKPGERFELELEERVLTH CCCCCCEEEEEEHHHHCCC >Mature Secondary Structure MHLTWLDSNSWLIEIRSKQILIDPWLVGPLVFGNLSWLFKGERLTPRNIPEKVDLIVLSQ CEEEEECCCCEEEEEECCEEEECCHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEEEEEC GLEDHAHPETLKQLDKNIPVVASPAAAKVVQELGYSQVITLEHGHTYAFENSIEIRAVPG CCCCCCCHHHHHHHHCCCCEEECCHHHHHHHHCCCCEEEEEECCCEEEECCCEEEEECCC SLVGPTLVENGYILKDLSTGNTIYYEPHGSHSEKIKEFAPVDVVISPVISLNLPLVGPII CCCCCHHHCCCEEEEEECCCCEEEECCCCCHHHHHHHHCCHHHEEECHHHCCCCEECCEE KGNESALQVAQWLEPQIMLPTAAGGDIDFQGLLIFFLKEKGNIKEIQSQLVKSNLATKII CCCHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHEEE EPKPGERFELELEERVLTH CCCCCCEEEEEEHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA