Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113478004

Identifier: 113478004

GI number: 113478004

Start: 7098413

End: 7098913

Strand: Reverse

Name: 113478004

Synonym: Tery_4619

Alternate gene names: NA

Gene position: 7098913-7098413 (Counterclockwise)

Preceding gene: 113478005

Following gene: 113478003

Centisome position: 91.6

GC content: 30.54

Gene sequence:

>501_bases
ATGAGAAAAATTACTTTAATTTTCACCCTAATATTATCCCTATATTTAATAATATTTAATCCTCAGAATGCCCTAGCTTC
TATTCATAAATACCCTGAATCTTCTATACAAATAATGTATCGTTCTCAACAAAGTTTGCGAGATATTTCAGACCGGGCAT
GGCAAGCAGTATTATACAAAAGAATCAAATCTGGTCAATTAAAAAATTTAAATTTACGACTAGTAGGTTTTCCTGGAATG
ATAAAATTAGCTAATTCCCAAAAATTGCAAATTACGACTGGCACTGGTAAGGTATGGAAAGCAGATAATGTTTTGTTAGA
CTCATCTTTTCCTCCTAATGTTGCAGAATATAATTTTCTTGAGGTCATGAAAAATTTAGATTATGATACTCCACTGCGAC
TACATTTATCTTTACAAGATTCTAGTATAGCTGAAATAGTAGTACCTATATTTGCTGTGAAAGAATGGCGTCAATTATTT
GAAAAAATTGATTTTTGGTGA

Upstream 100 bases:

>100_bases
TTTAACCTTTGAATAGGTTAACTTTGAATTGTAATTTTTACTTAACCCCTTGGGCTAGTTAACTTGTAACCTTAATTATT
ATCAAGTAATTAATCAAAAA

Downstream 100 bases:

>100_bases
CCAAAATTTAGATTAACCTCGGTTATTAATAGTCATAAATTTAACAGTTTTTAGCTAATGTGAGTAGGAAGTAGAGAGTA
AGGTTTGCTACCAAGATATA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM
IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF
EKIDFW

Sequences:

>Translated_166_residues
MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM
IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF
EKIDFW
>Mature_166_residues
MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYKRIKSGQLKNLNLRLVGFPGM
IKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFLEVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLF
EKIDFW

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19246; Mature: 19246

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYK
CCHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHH
RIKSGQLKNLNLRLVGFPGMIKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFL
HHCCCCCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEECCCEEEECCCCCCCHHHHHH
EVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLFEKIDFW
HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRKITLIFTLILSLYLIIFNPQNALASIHKYPESSIQIMYRSQQSLRDISDRAWQAVLYK
CCHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCHHHEEEEHHHHHHHHHHHHHHHHHHHH
RIKSGQLKNLNLRLVGFPGMIKLANSQKLQITTGTGKVWKADNVLLDSSFPPNVAEYNFL
HHCCCCCCCCEEEEEECCCEEEECCCCEEEEEECCCCEEECCCEEEECCCCCCCHHHHHH
EVMKNLDYDTPLRLHLSLQDSSIAEIVVPIFAVKEWRQLFEKIDFW
HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA