| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477657
Identifier: 113477657
GI number: 113477657
Start: 6552902
End: 6553891
Strand: Reverse
Name: 113477657
Synonym: Tery_4245
Alternate gene names: NA
Gene position: 6553891-6552902 (Counterclockwise)
Preceding gene: 113477658
Following gene: 113477655
Centisome position: 84.57
GC content: 34.95
Gene sequence:
>990_bases ATGTCTGAGAAAATTAAAATTTTGATGCTAGGAGATTCAAGTTCAGGCAAAACCTGCTTTATGTTAGGAATGTATGCAGC TATTCAAAATGGTAGTAAATTCAGTCTCAAGGCAACCGATCCAGATGAAGGCGTTGAAATGGCTACTTTATGGTCAACGA TCGTGGGCGAATCTGGTGAGGAACGTTGGCCTCGAGGTACCGATACACCTCAAATTTACAACTTTGAACTTTGCTACGCA TACAAATCATTAATAGAGTTTGAATGGCTGGACTACCGTGGCGGTTCTATGTTAGACATATCCAGTGATGATAACGTTAG GACACTTAGAAATTATGCTGCTGAATCTAATGGCTTATTCTTCTGTATATCAGGCAAAGATTTAAGGGAGCCAGTTACTG AGGCTAATCTGCAAAAGATTGCAATGGAAAGTAAAGCTAACCTCATGGGTCAGTATCTGCAATATTTGAATATCAATAGA AGACCAGCTCGAAAAAAAACTTTTCCAATTGTTATTATTGTTACTAAGTATGACTATTGTTATCATAGAAACAAAATAGA ATTAATGGAAGATGTCAAAAAAATGTTTCCTCCTTTGTTTGCTCCTAACTCTGATTGGTTAGTAATGATCTGTCCAGTTA CTTTAGGTAAGGAGCTTGCTAAAAATAGCGATAATGGAAAAATTGAACCTAGAAATCTTGATATTCCTGTAGCTTTTGTC TTATATTGTATCCTGACAGAACAAGCACGAATACAGGATGAAAAACTCACAGAAATTGATGATCAACTTGAGGTTCTGGA AAGTAATTTATTTAATCGATGGATTAATAGACGTAGAATTCAGAGACTGAACGAAAGTTTAGGACAAGCAGAAATGCAAT TACAAAAAACTATAGAAATGATAAATGTACTGGCTAGAGAACAAGATTTAAGTAGTACAGATATTTATTTAAGTGGAAAA AAGATCCAAATTGATTGGGATTTGAGTTAA
Upstream 100 bases:
>100_bases TACAACTAAAAATTGAATGACTTCAAAAACCAAAAATAAAAGCAACTATCGTTGATCTTAAAATTTATATATACCAATTA GTTAAGTTAGAAAGAGCAAC
Downstream 100 bases:
>100_bases TTTTTAGAGTCGTACAAAATAAATTTCCTCATCGAGAATAGCAATAGGAAACTAGAGGTTAATGAGTAATTAGTTTTCTA TATCCCATATATTTCTTTTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 328
Protein sequence:
>329_residues MSEKIKILMLGDSSSGKTCFMLGMYAAIQNGSKFSLKATDPDEGVEMATLWSTIVGESGEERWPRGTDTPQIYNFELCYA YKSLIEFEWLDYRGGSMLDISSDDNVRTLRNYAAESNGLFFCISGKDLREPVTEANLQKIAMESKANLMGQYLQYLNINR RPARKKTFPIVIIVTKYDYCYHRNKIELMEDVKKMFPPLFAPNSDWLVMICPVTLGKELAKNSDNGKIEPRNLDIPVAFV LYCILTEQARIQDEKLTEIDDQLEVLESNLFNRWINRRRIQRLNESLGQAEMQLQKTIEMINVLAREQDLSSTDIYLSGK KIQIDWDLS
Sequences:
>Translated_329_residues MSEKIKILMLGDSSSGKTCFMLGMYAAIQNGSKFSLKATDPDEGVEMATLWSTIVGESGEERWPRGTDTPQIYNFELCYA YKSLIEFEWLDYRGGSMLDISSDDNVRTLRNYAAESNGLFFCISGKDLREPVTEANLQKIAMESKANLMGQYLQYLNINR RPARKKTFPIVIIVTKYDYCYHRNKIELMEDVKKMFPPLFAPNSDWLVMICPVTLGKELAKNSDNGKIEPRNLDIPVAFV LYCILTEQARIQDEKLTEIDDQLEVLESNLFNRWINRRRIQRLNESLGQAEMQLQKTIEMINVLAREQDLSSTDIYLSGK KIQIDWDLS >Mature_328_residues SEKIKILMLGDSSSGKTCFMLGMYAAIQNGSKFSLKATDPDEGVEMATLWSTIVGESGEERWPRGTDTPQIYNFELCYAY KSLIEFEWLDYRGGSMLDISSDDNVRTLRNYAAESNGLFFCISGKDLREPVTEANLQKIAMESKANLMGQYLQYLNINRR PARKKTFPIVIIVTKYDYCYHRNKIELMEDVKKMFPPLFAPNSDWLVMICPVTLGKELAKNSDNGKIEPRNLDIPVAFVL YCILTEQARIQDEKLTEIDDQLEVLESNLFNRWINRRRIQRLNESLGQAEMQLQKTIEMINVLAREQDLSSTDIYLSGKK IQIDWDLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37872; Mature: 37741
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKIKILMLGDSSSGKTCFMLGMYAAIQNGSKFSLKATDPDEGVEMATLWSTIVGESGE CCCCEEEEEEECCCCCCEEEEEHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC ERWPRGTDTPQIYNFELCYAYKSLIEFEWLDYRGGSMLDISSDDNVRTLRNYAAESNGLF CCCCCCCCCCEEEEEHHHHHHHHHHHEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCEE FCISGKDLREPVTEANLQKIAMESKANLMGQYLQYLNINRRPARKKTFPIVIIVTKYDYC EEECCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHH YHRNKIELMEDVKKMFPPLFAPNSDWLVMICPVTLGKELAKNSDNGKIEPRNLDIPVAFV HCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCCHHHHH LYCILTEQARIQDEKLTEIDDQLEVLESNLFNRWINRRRIQRLNESLGQAEMQLQKTIEM HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INVLAREQDLSSTDIYLSGKKIQIDWDLS HHHHHHHCCCCCCEEEEECCEEEEEECCC >Mature Secondary Structure SEKIKILMLGDSSSGKTCFMLGMYAAIQNGSKFSLKATDPDEGVEMATLWSTIVGESGE CCCEEEEEEECCCCCCEEEEEHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCC ERWPRGTDTPQIYNFELCYAYKSLIEFEWLDYRGGSMLDISSDDNVRTLRNYAAESNGLF CCCCCCCCCCEEEEEHHHHHHHHHHHEEEEECCCCCEEEECCCCCHHHHHHHHCCCCCEE FCISGKDLREPVTEANLQKIAMESKANLMGQYLQYLNINRRPARKKTFPIVIIVTKYDYC EEECCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHH YHRNKIELMEDVKKMFPPLFAPNSDWLVMICPVTLGKELAKNSDNGKIEPRNLDIPVAFV HCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEECCCCCCCHHHHH LYCILTEQARIQDEKLTEIDDQLEVLESNLFNRWINRRRIQRLNESLGQAEMQLQKTIEM HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH INVLAREQDLSSTDIYLSGKKIQIDWDLS HHHHHHHCCCCCCEEEEECCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA