| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477658
Identifier: 113477658
GI number: 113477658
Start: 6553976
End: 6555010
Strand: Reverse
Name: 113477658
Synonym: Tery_4246
Alternate gene names: NA
Gene position: 6555010-6553976 (Counterclockwise)
Preceding gene: 113477680
Following gene: 113477657
Centisome position: 84.58
GC content: 31.3
Gene sequence:
>1035_bases ATGGACTTATGGTCTGTAATAGTTTACGGTAGAACCAAAGAAGCCGATTATCGTTTTCTGGCCATTCCCAATGATTTTGG AATAGAAGAAAAGAATTGGGCACGCAAATATATTCATGGGACTACAGTCTATGCAGAGAAGTTACGGGGGAATCCTCGTT GGTCTCTATTTAAGAATCATAAGCATTGTATTTTCGGCGTGACTTGTATGGTTAGGGAGTTAATTGGTTCCGAACCAGAA TATAAATATCTGGCCAAGGATGCTGCTGGGCGATCGCTCCATATTTTCGTTGGTTATGTTGCTAGAATCAACAAATATTC TTTTAATTCATTGAAGATTTTGCCTGGCTTAGAAGACCTTGAATTTTTTAAGTCTGAGTATTTACTAACATCTTTAAAAA ACCTGTGGTATCTAAAAGATTACCAATTTACTAAAGGAAAGATTCATGCATATCCGTATGAGTTAGTACTAAATTATTCT AATGTGACAGAATTTAGAGATTATATTAATGTCTTAAATAAATCTATAAACCCAAATTTTATACCATGCTCGGAAGGAGA AAATCAAGCTTTTATTTGCCCTGACGAACCAGAATATAGACACAATTTGTGGGAAAGTTGTTGTAAGTTCTTTGATTATC CATATAAATATATAACTCTTTCTCTTTGCCTAGGTATTCCTCGAAAGCAAGATGTTTTACAAGGACCATTTTTAAATGCT ACAACTTCTGACGCAACTCAACTTATAAAGTTAGTTAAACCGAATTCAAAAGTCATAAATGATTCCTTAAAACCTGACAT TAAAGATGATTCCAATAGCACAAAAGATGTCTATAATAATTCAATAGATACTTTTGCAAAAAGATTATCAGATTCTATTT TCTGGAAACATATAACTTGGATATTATTAATCTCAGCTTTTCTTTTTTTTATGCTCTTATTTATCTTTAAAATATATATC TTAGATATATTTATAAGTATATTAATTGGTTTTTATCTAGGAAGAGTATTTGAGAACAGTACAACTAAAAATTGA
Upstream 100 bases:
>100_bases TGCGAGGAGTTGGCAAAGAGGTCTTCATTTGAAAACTCAATAAAACAGTAGATAATATATAAATTAGTGTCCCTAAATAC AAAGCTAGAGGTATAAATTT
Downstream 100 bases:
>100_bases ATGACTTCAAAAACCAAAAATAAAAGCAACTATCGTTGATCTTAAAATTTATATATACCAATTAGTTAAGTTAGAAAGAG CAACATGTCTGAGAAAATTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MDLWSVIVYGRTKEADYRFLAIPNDFGIEEKNWARKYIHGTTVYAEKLRGNPRWSLFKNHKHCIFGVTCMVRELIGSEPE YKYLAKDAAGRSLHIFVGYVARINKYSFNSLKILPGLEDLEFFKSEYLLTSLKNLWYLKDYQFTKGKIHAYPYELVLNYS NVTEFRDYINVLNKSINPNFIPCSEGENQAFICPDEPEYRHNLWESCCKFFDYPYKYITLSLCLGIPRKQDVLQGPFLNA TTSDATQLIKLVKPNSKVINDSLKPDIKDDSNSTKDVYNNSIDTFAKRLSDSIFWKHITWILLISAFLFFMLLFIFKIYI LDIFISILIGFYLGRVFENSTTKN
Sequences:
>Translated_344_residues MDLWSVIVYGRTKEADYRFLAIPNDFGIEEKNWARKYIHGTTVYAEKLRGNPRWSLFKNHKHCIFGVTCMVRELIGSEPE YKYLAKDAAGRSLHIFVGYVARINKYSFNSLKILPGLEDLEFFKSEYLLTSLKNLWYLKDYQFTKGKIHAYPYELVLNYS NVTEFRDYINVLNKSINPNFIPCSEGENQAFICPDEPEYRHNLWESCCKFFDYPYKYITLSLCLGIPRKQDVLQGPFLNA TTSDATQLIKLVKPNSKVINDSLKPDIKDDSNSTKDVYNNSIDTFAKRLSDSIFWKHITWILLISAFLFFMLLFIFKIYI LDIFISILIGFYLGRVFENSTTKN >Mature_344_residues MDLWSVIVYGRTKEADYRFLAIPNDFGIEEKNWARKYIHGTTVYAEKLRGNPRWSLFKNHKHCIFGVTCMVRELIGSEPE YKYLAKDAAGRSLHIFVGYVARINKYSFNSLKILPGLEDLEFFKSEYLLTSLKNLWYLKDYQFTKGKIHAYPYELVLNYS NVTEFRDYINVLNKSINPNFIPCSEGENQAFICPDEPEYRHNLWESCCKFFDYPYKYITLSLCLGIPRKQDVLQGPFLNA TTSDATQLIKLVKPNSKVINDSLKPDIKDDSNSTKDVYNNSIDTFAKRLSDSIFWKHITWILLISAFLFFMLLFIFKIYI LDIFISILIGFYLGRVFENSTTKN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40290; Mature: 40290
Theoretical pI: Translated: 8.57; Mature: 8.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLWSVIVYGRTKEADYRFLAIPNDFGIEEKNWARKYIHGTTVYAEKLRGNPRWSLFKNH CCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEHHCCC KHCIFGVTCMVRELIGSEPEYKYLAKDAAGRSLHIFVGYVARINKYSFNSLKILPGLEDL CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCEEECCCCHHH EFFKSEYLLTSLKNLWYLKDYQFTKGKIHAYPYELVLNYSNVTEFRDYINVLNKSINPNF HHHHHHHHHHHHHHHEEEECCEECCCCEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCE IPCSEGENQAFICPDEPEYRHNLWESCCKFFDYPYKYITLSLCLGIPRKQDVLQGPFLNA EECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCC TTSDATQLIKLVKPNSKVINDSLKPDIKDDSNSTKDVYNNSIDTFAKRLSDSIFWKHITW CCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH ILLISAFLFFMLLFIFKIYILDIFISILIGFYLGRVFENSTTKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MDLWSVIVYGRTKEADYRFLAIPNDFGIEEKNWARKYIHGTTVYAEKLRGNPRWSLFKNH CCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHHHHHCCHHHHHHHHCCCCCEEHHCCC KHCIFGVTCMVRELIGSEPEYKYLAKDAAGRSLHIFVGYVARINKYSFNSLKILPGLEDL CCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEEEEHHHHHHCCCCCCCEEECCCCHHH EFFKSEYLLTSLKNLWYLKDYQFTKGKIHAYPYELVLNYSNVTEFRDYINVLNKSINPNF HHHHHHHHHHHHHHHEEEECCEECCCCEEECCEEEEEECCHHHHHHHHHHHHHCCCCCCE IPCSEGENQAFICPDEPEYRHNLWESCCKFFDYPYKYITLSLCLGIPRKQDVLQGPFLNA EECCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHCCCCCCC TTSDATQLIKLVKPNSKVINDSLKPDIKDDSNSTKDVYNNSIDTFAKRLSDSIFWKHITW CCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHH ILLISAFLFFMLLFIFKIYILDIFISILIGFYLGRVFENSTTKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA