| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477632
Identifier: 113477632
GI number: 113477632
Start: 6506622
End: 6509042
Strand: Reverse
Name: 113477632
Synonym: Tery_4219
Alternate gene names: NA
Gene position: 6509042-6506622 (Counterclockwise)
Preceding gene: 113477633
Following gene: 113477631
Centisome position: 83.99
GC content: 36.6
Gene sequence:
>2421_bases GTGACTCAAGAATTTCATGTTTCAATTACTCCCTTGGGAGAAGACGAATATTTTGTCCGGACAGAAAAAGTCCCTGTTGG AGGCCCAGTGGCAGAAGAAATAGTCCAATGGCCTGTAGAAAAATGGCTAACTCAAGCCCGTCAACTATTTCGTGATCCAT TAACTGATCTTCTAGAAGAAAAGTCCAACTCTCAGGTAGTGATCCCTAATCAGATTATGTCCAGGTCTGGGGAAGTAGTA AGTCCAAGTTTAGTAGCATTAGGCCAAGAAATGTATCAAGAACTATTCAAAGATAGCCTGAGAGATAGTTGGAATTGTGC CCAAGGAATCGCTCACAATCGAGGTGAGGTTTTACAGTTACGTTTAGGTACTAAAGACAGATATCTATCTAGTTTGCCTT GGGAGGTACTCCATGTAGGCGATCGCCCCCTGGCGACTGGTACTGACATTGTCTTCTCCCGATATCAACCTAATACCTGC TTACGGAAACTTAACCGGATATTAACACCTGAAGAACCATTAAAAATTTTAATGGCGATCGCGGTTCCCAGTGATAAGGA TAGTCTAGAACTGGAAAAAGAATATAAGGTATTACAAGAAGAACTGCAAAAAAATAGTGGGGCAACTCAGATTTACCTAG ACATTCTCCGGCAACCAGGGCGAGAACAACTTACCCAAGCATTAGAACAAGGTAAATATCAAGTTTTCCACTATGCAGGT CATAGCAACTGGGGTATTTCGGGTGGTGAAATATCTTTAGTGAGTAATATAACAGGTTTAGCAGAAAGTCTGAGTGGTAA GGATCTGTCAGGTTTGCTAGTTAACAATGGCATTCAGATGGCGATCTTCAACTCATGTCGAGGTGCGTATAACCATCTTA TTGAACCTACTGATGAGGGAATAGAGCTCAACTTAGCAGAAGCGATGGTCAAACGGGGAATTCCTGGGGTGCTAGCAATG GCAGAACGTATTCCAGATGAAGTTTCTCTTATCCTAACACGTTTGTTTTATCGTAATCTCAATCAGGGTTATCCGATAGA CTTAAGTTTAAATCGGGCAAGACAAGGTTTGATTTCTGCCTATGGTTCACATCAACTTTACTGGGCATTGCCTGTTGTTT ATCTACATCAAGATTTTGGTGGATATCTAATTGAAAAACAAAGCGATTCTCAAAATGAAATACAAGAGGATATCCTGACG TCTATTGATGAAAAAATTGAAACTCCGAATTTATCAGAAAATTTAAATCCCGTACAACCAGATATTGATTTAGGGAACCT GGATGAGGATCCTACTATGGCTAAAAATGATAATTTAAATTTCCAGTTTCAAGACAGTAAATATCAAGTTATGACACTTG AAGATATATTGCCAGAAAAAGAAGATATATTGCCAGAAAAAGAAATAGGAAGGCAAATAAATAATCAAGACTATGAAAAA CAAGAAGATTTAATAACACCTACACAAAGTAGTGAAGAATCAACTCATTTAATATTCACGACATCAAAGACTAAAAATAA GTCTCATAAGTTTCTTTGGCAAACAAGATTTACATTATTAACATTAGGATATGCAATTTCAGGAATAATATTATTTTTGG GAATTAACTACATTGTTTTCAATAATCGTCAATCAATAATGAGTGCTGAATTACCTAAAGCACCTGCTCCAGCTATCAAA TATAAATACAACAGAGTTAGACTTGTTAATCAGACAATTAATACTACCCCAGAAGTACAGAACATGGCAATTCAACAGTT TAATCAAAATGAGCTTCGAGCTGGTAAAATGGTAGTAGAAACATTATTAGAAGAAGGAGAATTATCTCAAGCAGCAGAAG TTATAGCTGTTGTGCCAGAAAAGCTTAGTGAAGATCGAGAAATTAATTTTCTTAAAGGTCGATTAGCTTGGGAATTATTC CAAGATAGAAATCAACATAATCTGATAGATGAAGCTATAAATTATTGGGAAAAAGCTGCTGCCCAGAGCCAAGAAAATCT TCAATATCAAAATGCTTTAGGCTTTGCTTATTACACTAAAGGAGATATAGAAAAAGCCTATGCAGCTTGGTTAAAAGTGT TGCATTTATCTGGAGAAATTGCCCCAGAAATAAAAAATGTTAGCCCTGTTTCTCATAACTACATGGGAAATTTATCTGTC AAGAATAGAGAAGTTCTAAATGCTTATGCAGGTCTAGGATTAGTTACCCTTAAATATGCTCAAAATTTACAAAAAATTCC TGATAAAGCTTTTAAATATGCTAGTAAAGTTATGAGAGAAGCTGGCCAAGAGTTTCATGTCCTACAACTACAAAAAAATT GGTTGTGGTCTCCTAAAGCACGTCAAGATTGGGATTTACTATTGAAACTTCGAGAAAGGCAACAATTTGAACATAATAAA AAACCAGAAGAGCTGGCTTAG
Upstream 100 bases:
>100_bases ACCAAAACCAAAGCGCGTCAAATATTTCCCATTTATTCACGGTTAAAAGCGAAGATCGGGAGTTTTGACGAAATAATTTG AGTAAAAGGATAGAAAACAA
Downstream 100 bases:
>100_bases TAATAGTAATGTTAGAGCCAGTGACAGTTTATAGCTGAAGTCTGAAGTAGTTCAGTTAAATTCGCAGCATGGGGGTGAAA ATATACTAAGCGCCCTGGTG
Product: heterocyst differentiation protein
Products: NA
Alternate protein names: Heterocyst Differentiation Protein; TPR Repeat-Containing Protein; Heterocyst Differentiation Protein HetF; FHA Domain Containing Protein; SEFIR Domain Protein; Tetratricopeptide Repeat-Containing Protein; HEAT Repeat-Containing PBS Lyase; Tetratricopeptide Repeat Domain Protein; FHA Domain Protein
Number of amino acids: Translated: 806; Mature: 805
Protein sequence:
>806_residues MTQEFHVSITPLGEDEYFVRTEKVPVGGPVAEEIVQWPVEKWLTQARQLFRDPLTDLLEEKSNSQVVIPNQIMSRSGEVV SPSLVALGQEMYQELFKDSLRDSWNCAQGIAHNRGEVLQLRLGTKDRYLSSLPWEVLHVGDRPLATGTDIVFSRYQPNTC LRKLNRILTPEEPLKILMAIAVPSDKDSLELEKEYKVLQEELQKNSGATQIYLDILRQPGREQLTQALEQGKYQVFHYAG HSNWGISGGEISLVSNITGLAESLSGKDLSGLLVNNGIQMAIFNSCRGAYNHLIEPTDEGIELNLAEAMVKRGIPGVLAM AERIPDEVSLILTRLFYRNLNQGYPIDLSLNRARQGLISAYGSHQLYWALPVVYLHQDFGGYLIEKQSDSQNEIQEDILT SIDEKIETPNLSENLNPVQPDIDLGNLDEDPTMAKNDNLNFQFQDSKYQVMTLEDILPEKEDILPEKEIGRQINNQDYEK QEDLITPTQSSEESTHLIFTTSKTKNKSHKFLWQTRFTLLTLGYAISGIILFLGINYIVFNNRQSIMSAELPKAPAPAIK YKYNRVRLVNQTINTTPEVQNMAIQQFNQNELRAGKMVVETLLEEGELSQAAEVIAVVPEKLSEDREINFLKGRLAWELF QDRNQHNLIDEAINYWEKAAAQSQENLQYQNALGFAYYTKGDIEKAYAAWLKVLHLSGEIAPEIKNVSPVSHNYMGNLSV KNREVLNAYAGLGLVTLKYAQNLQKIPDKAFKYASKVMREAGQEFHVLQLQKNWLWSPKARQDWDLLLKLRERQQFEHNK KPEELA
Sequences:
>Translated_806_residues MTQEFHVSITPLGEDEYFVRTEKVPVGGPVAEEIVQWPVEKWLTQARQLFRDPLTDLLEEKSNSQVVIPNQIMSRSGEVV SPSLVALGQEMYQELFKDSLRDSWNCAQGIAHNRGEVLQLRLGTKDRYLSSLPWEVLHVGDRPLATGTDIVFSRYQPNTC LRKLNRILTPEEPLKILMAIAVPSDKDSLELEKEYKVLQEELQKNSGATQIYLDILRQPGREQLTQALEQGKYQVFHYAG HSNWGISGGEISLVSNITGLAESLSGKDLSGLLVNNGIQMAIFNSCRGAYNHLIEPTDEGIELNLAEAMVKRGIPGVLAM AERIPDEVSLILTRLFYRNLNQGYPIDLSLNRARQGLISAYGSHQLYWALPVVYLHQDFGGYLIEKQSDSQNEIQEDILT SIDEKIETPNLSENLNPVQPDIDLGNLDEDPTMAKNDNLNFQFQDSKYQVMTLEDILPEKEDILPEKEIGRQINNQDYEK QEDLITPTQSSEESTHLIFTTSKTKNKSHKFLWQTRFTLLTLGYAISGIILFLGINYIVFNNRQSIMSAELPKAPAPAIK YKYNRVRLVNQTINTTPEVQNMAIQQFNQNELRAGKMVVETLLEEGELSQAAEVIAVVPEKLSEDREINFLKGRLAWELF QDRNQHNLIDEAINYWEKAAAQSQENLQYQNALGFAYYTKGDIEKAYAAWLKVLHLSGEIAPEIKNVSPVSHNYMGNLSV KNREVLNAYAGLGLVTLKYAQNLQKIPDKAFKYASKVMREAGQEFHVLQLQKNWLWSPKARQDWDLLLKLRERQQFEHNK KPEELA >Mature_805_residues TQEFHVSITPLGEDEYFVRTEKVPVGGPVAEEIVQWPVEKWLTQARQLFRDPLTDLLEEKSNSQVVIPNQIMSRSGEVVS PSLVALGQEMYQELFKDSLRDSWNCAQGIAHNRGEVLQLRLGTKDRYLSSLPWEVLHVGDRPLATGTDIVFSRYQPNTCL RKLNRILTPEEPLKILMAIAVPSDKDSLELEKEYKVLQEELQKNSGATQIYLDILRQPGREQLTQALEQGKYQVFHYAGH SNWGISGGEISLVSNITGLAESLSGKDLSGLLVNNGIQMAIFNSCRGAYNHLIEPTDEGIELNLAEAMVKRGIPGVLAMA ERIPDEVSLILTRLFYRNLNQGYPIDLSLNRARQGLISAYGSHQLYWALPVVYLHQDFGGYLIEKQSDSQNEIQEDILTS IDEKIETPNLSENLNPVQPDIDLGNLDEDPTMAKNDNLNFQFQDSKYQVMTLEDILPEKEDILPEKEIGRQINNQDYEKQ EDLITPTQSSEESTHLIFTTSKTKNKSHKFLWQTRFTLLTLGYAISGIILFLGINYIVFNNRQSIMSAELPKAPAPAIKY KYNRVRLVNQTINTTPEVQNMAIQQFNQNELRAGKMVVETLLEEGELSQAAEVIAVVPEKLSEDREINFLKGRLAWELFQ DRNQHNLIDEAINYWEKAAAQSQENLQYQNALGFAYYTKGDIEKAYAAWLKVLHLSGEIAPEIKNVSPVSHNYMGNLSVK NREVLNAYAGLGLVTLKYAQNLQKIPDKAFKYASKVMREAGQEFHVLQLQKNWLWSPKARQDWDLLLKLRERQQFEHNKK PEELA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 91804; Mature: 91673
Theoretical pI: Translated: 4.97; Mature: 4.97
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQEFHVSITPLGEDEYFVRTEKVPVGGPVAEEIVQWPVEKWLTQARQLFRDPLTDLLEE CCCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KSNSQVVIPNQIMSRSGEVVSPSLVALGQEMYQELFKDSLRDSWNCAQGIAHNRGEVLQL CCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEE RLGTKDRYLSSLPWEVLHVGDRPLATGTDIVFSRYQPNTCLRKLNRILTPEEPLKILMAI EECCCHHHHHHCCHHHEECCCCCCCCCCHHEEECCCCHHHHHHHHHHCCCCHHHHEEEEE AVPSDKDSLELEKEYKVLQEELQKNSGATQIYLDILRQPGREQLTQALEQGKYQVFHYAG ECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEEC HSNWGISGGEISLVSNITGLAESLSGKDLSGLLVNNGIQMAIFNSCRGAYNHLIEPTDEG CCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEECCCEEEEEHHHHHHHHHHCCCCCCCC IELNLAEAMVKRGIPGVLAMAERIPDEVSLILTRLFYRNLNQGYPIDLSLNRARQGLISA CEEEHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH YGSHQLYWALPVVYLHQDFGGYLIEKQSDSQNEIQEDILTSIDEKIETPNLSENLNPVQP CCCCEEEEHHHHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DIDLGNLDEDPTMAKNDNLNFQFQDSKYQVMTLEDILPEKEDILPEKEIGRQINNQDYEK CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHHCCCHHHCCCHHHHHHHCCCCCCHH QEDLITPTQSSEESTHLIFTTSKTKNKSHKFLWQTRFTLLTLGYAISGIILFLGINYIVF HHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE NNRQSIMSAELPKAPAPAIKYKYNRVRLVNQTINTTPEVQNMAIQQFNQNELRAGKMVVE CCCHHHHHHCCCCCCCCHHEEECCEEEEEEHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH TLLEEGELSQAAEVIAVVPEKLSEDREINFLKGRLAWELFQDRNQHNLIDEAINYWEKAA HHHHCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH AQSQENLQYQNALGFAYYTKGDIEKAYAAWLKVLHLSGEIAPEIKNVSPVSHNYMGNLSV HCCHHHCHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KNREVLNAYAGLGLVTLKYAQNLQKIPDKAFKYASKVMREAGQEFHVLQLQKNWLWSPKA CHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC RQDWDLLLKLRERQQFEHNKKPEELA CCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TQEFHVSITPLGEDEYFVRTEKVPVGGPVAEEIVQWPVEKWLTQARQLFRDPLTDLLEE CCEEEEEEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC KSNSQVVIPNQIMSRSGEVVSPSLVALGQEMYQELFKDSLRDSWNCAQGIAHNRGEVLQL CCCCEEEECHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCEEEE RLGTKDRYLSSLPWEVLHVGDRPLATGTDIVFSRYQPNTCLRKLNRILTPEEPLKILMAI EECCCHHHHHHCCHHHEECCCCCCCCCCHHEEECCCCHHHHHHHHHHCCCCHHHHEEEEE AVPSDKDSLELEKEYKVLQEELQKNSGATQIYLDILRQPGREQLTQALEQGKYQVFHYAG ECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHCCCEEEEEEEC HSNWGISGGEISLVSNITGLAESLSGKDLSGLLVNNGIQMAIFNSCRGAYNHLIEPTDEG CCCCCCCCCCEEHHHHHHHHHHHCCCCCCCCCEECCCEEEEEHHHHHHHHHHCCCCCCCC IELNLAEAMVKRGIPGVLAMAERIPDEVSLILTRLFYRNLNQGYPIDLSLNRARQGLISA CEEEHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHH YGSHQLYWALPVVYLHQDFGGYLIEKQSDSQNEIQEDILTSIDEKIETPNLSENLNPVQP CCCCEEEEHHHHHHEECCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC DIDLGNLDEDPTMAKNDNLNFQFQDSKYQVMTLEDILPEKEDILPEKEIGRQINNQDYEK CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEHHHHCCCHHHCCCHHHHHHHCCCCCCHH QEDLITPTQSSEESTHLIFTTSKTKNKSHKFLWQTRFTLLTLGYAISGIILFLGINYIVF HHHCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE NNRQSIMSAELPKAPAPAIKYKYNRVRLVNQTINTTPEVQNMAIQQFNQNELRAGKMVVE CCCHHHHHHCCCCCCCCHHEEECCEEEEEEHHCCCCCHHHHHHHHHCCCHHHHHHHHHHH TLLEEGELSQAAEVIAVVPEKLSEDREINFLKGRLAWELFQDRNQHNLIDEAINYWEKAA HHHHCCCHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH AQSQENLQYQNALGFAYYTKGDIEKAYAAWLKVLHLSGEIAPEIKNVSPVSHNYMGNLSV HCCHHHCHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC KNREVLNAYAGLGLVTLKYAQNLQKIPDKAFKYASKVMREAGQEFHVLQLQKNWLWSPKA CHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC RQDWDLLLKLRERQQFEHNKKPEELA CCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA