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The map label for this gene is ytfH [C]

Identifier: 113477633

GI number: 113477633

Start: 6511382

End: 6511732

Strand: Reverse

Name: ytfH [C]

Synonym: Tery_4220

Alternate gene names: 113477633

Gene position: 6511732-6511382 (Counterclockwise)

Preceding gene: 113477636

Following gene: 113477632

Centisome position: 84.02

GC content: 40.17

Gene sequence:

>351_bases
ATGACAGATGTACCGTGTTTAAGTAACAGTTGTCCGATTCAGTTCGCATTAGGAATATTAGGGTGCAAGTGGTCAGTGTT
GATTTTGCGAGAGTTGTTAAGTGGCGATCGCCGAACTCATGAATTATTAGAAGCTTTACAAGGAATTAGCTCAAAAACTC
TGATGTTAAGACTGAGAGAGTTTGAAAAGCATGGTTTGTTAGCAAGGCGGGCATATCCAGAAGTGCCACCCCATGTTGAA
TATTCTCTGACGGAGAAAGGTCTACAAATACAACCAGTAATAATAGCTCTCAAACAGTTAGGAGAACAATGGTTGGAAGA
GAAAAATTGTGGTTGTTCAATGGATAGGTGA

Upstream 100 bases:

>100_bases
AAGTAAAAAATTGTGTTTTTTCAGTAGAAAAAGCTCTTTTTAAAGAAAAATTAATTTTTAAGAGTTACAATAAAATGAAA
CTTTAAAATTAGATGTGAAA

Downstream 100 bases:

>100_bases
GCCAAACTAATATGCTGACAGAAGTTTTCAGGGCATGACTTGGTTGAGATATTGACTTTTCCAGCGAATGATGTTCTGAT
TCAGATTTGGAAAATGATAG

Product: HxlR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 115

Protein sequence:

>116_residues
MTDVPCLSNSCPIQFALGILGCKWSVLILRELLSGDRRTHELLEALQGISSKTLMLRLREFEKHGLLARRAYPEVPPHVE
YSLTEKGLQIQPVIIALKQLGEQWLEEKNCGCSMDR

Sequences:

>Translated_116_residues
MTDVPCLSNSCPIQFALGILGCKWSVLILRELLSGDRRTHELLEALQGISSKTLMLRLREFEKHGLLARRAYPEVPPHVE
YSLTEKGLQIQPVIIALKQLGEQWLEEKNCGCSMDR
>Mature_115_residues
TDVPCLSNSCPIQFALGILGCKWSVLILRELLSGDRRTHELLEALQGISSKTLMLRLREFEKHGLLARRAYPEVPPHVEY
SLTEKGLQIQPVIIALKQLGEQWLEEKNCGCSMDR

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082391, Length=100, Percent_Identity=40, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 13160; Mature: 13028

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDVPCLSNSCPIQFALGILGCKWSVLILRELLSGDRRTHELLEALQGISSKTLMLRLRE
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
FEKHGLLARRAYPEVPPHVEYSLTEKGLQIQPVIIALKQLGEQWLEEKNCGCSMDR
HHHHCCHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TDVPCLSNSCPIQFALGILGCKWSVLILRELLSGDRRTHELLEALQGISSKTLMLRLRE
CCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
FEKHGLLARRAYPEVPPHVEYSLTEKGLQIQPVIIALKQLGEQWLEEKNCGCSMDR
HHHHCCHHHHCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]