| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113477631
Identifier: 113477631
GI number: 113477631
Start: 6504895
End: 6505806
Strand: Reverse
Name: 113477631
Synonym: Tery_4218
Alternate gene names: NA
Gene position: 6505806-6504895 (Counterclockwise)
Preceding gene: 113477632
Following gene: 113477629
Centisome position: 83.94
GC content: 33.66
Gene sequence:
>912_bases ATGACACAAAAACATGAAAATATTATCAATTTTTTTAACTCAGTTCCTGGGAGAATACTCTCACACCTAATTGCTGTTTT GTTAACTTTAGGTGGTGTTTGGTTGTTTCAAAATCGACCATTAAATTTTTCAGAAACTATACCTTTGACTCCCGACCCAA TTAACCTTGAACGATATAATAAAGAAAAACCTATTAATTATAGTCCAAATACTGTAGAAGCAGAAAAACAATTAGCTATT GAACAGTTTAAAAAAAATGATATTAAAGTTGGCAAAAAAGCTATTGAATCTCTGCTAAATAGAGGCGCTTTTTTAGAGGC AAAAGAAGCTCTTAATATTGTCAGAAATGCACCTAAGAATAACAATCAGATTGATCCTGACATCAATTTTTTATATGGTC GATTGGTTTGGGAGTTAGCCCAAGATGGAAATAGAAATTATTCTGTAGATGAAGCTTTATATTTCTGGGAAAAAGCAATT TCTGAAAGTCCTGATTATGTTCTATATCAAAATGCTATAGGTTTTGCTTATTATACGAAAGGGGAATTGAAAAAAGCTTA TGATGCTTGGTTCAAAGTATTAGAATTATCAGGAGAAACTTTACCAGAAACATTGCAGAACATGTCGACTGAAGATATTA CTACTCCAGAAGTTGAACAAAAACATGCTCTTAATGCTTATGCAGGTATTGGATTAGTCATGATGAAATCTGCTCTGACT TCTCAAGGAGATGAGCAGAGAGAACGCTGGTTGAGAGCGCTTCAATATCGGACAAAGGTAATGAATGAAGCTGCCAGAGA ATATCATATTCCTCAACTGCGGCAAAATTGGTTATGGTCGCGAGTGGCACTACGAGATTGGGATTTTTTGATGAGAACAG ATTGGAATATTTTAAGAAAAAGAAATAATTGA
Upstream 100 bases:
>100_bases AAGAAAAATTTTGAATAGCTTACCTAATTAAAGTAGTAATGGTTAGATATATTGAAAGTTTATTTTTCAAATGACTCATC TAATTATATAAAATATCACC
Downstream 100 bases:
>100_bases TATTTTATCATGTTCCTTGAAGCATTAAGATAATAGATATATTATAAATAATTAAATTTGTATAAAAGTTTGGCTTGAAA CTGATCAAGAAAAGATTGGT
Product: heterocyst differentiation protein
Products: NA
Alternate protein names: Heterocyst Differentiation Protein HetF; Tetratricopeptide Repeat Domain Protein
Number of amino acids: Translated: 303; Mature: 302
Protein sequence:
>303_residues MTQKHENIINFFNSVPGRILSHLIAVLLTLGGVWLFQNRPLNFSETIPLTPDPINLERYNKEKPINYSPNTVEAEKQLAI EQFKKNDIKVGKKAIESLLNRGAFLEAKEALNIVRNAPKNNNQIDPDINFLYGRLVWELAQDGNRNYSVDEALYFWEKAI SESPDYVLYQNAIGFAYYTKGELKKAYDAWFKVLELSGETLPETLQNMSTEDITTPEVEQKHALNAYAGIGLVMMKSALT SQGDEQRERWLRALQYRTKVMNEAAREYHIPQLRQNWLWSRVALRDWDFLMRTDWNILRKRNN
Sequences:
>Translated_303_residues MTQKHENIINFFNSVPGRILSHLIAVLLTLGGVWLFQNRPLNFSETIPLTPDPINLERYNKEKPINYSPNTVEAEKQLAI EQFKKNDIKVGKKAIESLLNRGAFLEAKEALNIVRNAPKNNNQIDPDINFLYGRLVWELAQDGNRNYSVDEALYFWEKAI SESPDYVLYQNAIGFAYYTKGELKKAYDAWFKVLELSGETLPETLQNMSTEDITTPEVEQKHALNAYAGIGLVMMKSALT SQGDEQRERWLRALQYRTKVMNEAAREYHIPQLRQNWLWSRVALRDWDFLMRTDWNILRKRNN >Mature_302_residues TQKHENIINFFNSVPGRILSHLIAVLLTLGGVWLFQNRPLNFSETIPLTPDPINLERYNKEKPINYSPNTVEAEKQLAIE QFKKNDIKVGKKAIESLLNRGAFLEAKEALNIVRNAPKNNNQIDPDINFLYGRLVWELAQDGNRNYSVDEALYFWEKAIS ESPDYVLYQNAIGFAYYTKGELKKAYDAWFKVLELSGETLPETLQNMSTEDITTPEVEQKHALNAYAGIGLVMMKSALTS QGDEQRERWLRALQYRTKVMNEAAREYHIPQLRQNWLWSRVALRDWDFLMRTDWNILRKRNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35316; Mature: 35184
Theoretical pI: Translated: 7.78; Mature: 7.78
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQKHENIINFFNSVPGRILSHLIAVLLTLGGVWLFQNRPLNFSETIPLTPDPINLERYN CCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCHHHCC KEKPINYSPNTVEAEKQLAIEQFKKNDIKVGKKAIESLLNRGAFLEAKEALNIVRNAPKN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC NNQIDPDINFLYGRLVWELAQDGNRNYSVDEALYFWEKAISESPDYVLYQNAIGFAYYTK CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEECH GELKKAYDAWFKVLELSGETLPETLQNMSTEDITTPEVEQKHALNAYAGIGLVMMKSALT HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SQGDEQRERWLRALQYRTKVMNEAAREYHIPQLRQNWLWSRVALRDWDFLMRTDWNILRK CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC RNN CCC >Mature Secondary Structure TQKHENIINFFNSVPGRILSHLIAVLLTLGGVWLFQNRPLNFSETIPLTPDPINLERYN CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCHHHCC KEKPINYSPNTVEAEKQLAIEQFKKNDIKVGKKAIESLLNRGAFLEAKEALNIVRNAPKN CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC NNQIDPDINFLYGRLVWELAQDGNRNYSVDEALYFWEKAISESPDYVLYQNAIGFAYYTK CCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEECH GELKKAYDAWFKVLELSGETLPETLQNMSTEDITTPEVEQKHALNAYAGIGLVMMKSALT HHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SQGDEQRERWLRALQYRTKVMNEAAREYHIPQLRQNWLWSRVALRDWDFLMRTDWNILRK CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC RNN CCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA