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The map label for this gene is hybD [C]

Identifier: 113476881

GI number: 113476881

Start: 5162136

End: 5162609

Strand: Reverse

Name: hybD [C]

Synonym: Tery_3367

Alternate gene names: 113476881

Gene position: 5162609-5162136 (Counterclockwise)

Preceding gene: 113476882

Following gene: 113476880

Centisome position: 66.61

GC content: 40.08

Gene sequence:

>474_bases
ATGTTGATGTTGACAATTATCGGTTGCGGTAATTTTAACCGTAGTGATGATGGGGTAGGAGTAATTATTGCTCAACGCTT
GCAACAATATTTGAGTACACATCCCCTTCCTAATGTCCAAGTTTATGACTGCGGTACTGCTGGAATGGAAGTGATGTTTC
AAGCACGGGGAACTCAGCGACTAATTATTGTGGATGCTAGTGCGACAGGTTCGGAACCAGGTGCAGTCTTTAAAGTTCCT
AGTTCGGAGTTGGAAGCATTGCCAGAACCTAGTTATAGTTTGCATGATTTTCGTTGGGATAATGCTCTGGCGGTAGGTAG
AAAAATTTTTCGGGAAGATTTTCCTGAGGATGTAACTGTCTATTTAATAGAAGCTGAAAATTTAGATTTTGGTCTAGAAC
TTTCCCCTGTTGTTCAGTGTTCTTCTGAAAAGGTTTTTCAAGAAATTGTCAACAGTTTTGAGAGTAAAAGGTAG

Upstream 100 bases:

>100_bases
AACTGGTTGAAAAAATGGGTTATTGTTAAGGATGTGAAGTCAATAAACTAGATTTTATCTAGCTTTCAGAAAATCTAAAC
CCCTATTTAACAAATAGATA

Downstream 100 bases:

>100_bases
GAGAAACTACGCCAAAATATACAAAGTATTTGATAATCTCAAAAAAAAATTAATACTAAGGACGGAAATTATCATGGATC
AACAAAGACAAGAGCAATAT

Product: hydrogenase maturation protease

Products: NA

Alternate protein names: Hydrogenase Expression/Formation Protein; Peptidase; Ni Fe-Hydrogenase Maturation Factor; Hydrogenase 2 Maturation Endopeptidase; Hydrogenase Maturation Protease HyaD; Ni/Fe Hydrogenase Maturation Protease; HupD Hydrogenase Related Function; Hydrogenase 2 Maturation Protease

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MLMLTIIGCGNFNRSDDGVGVIIAQRLQQYLSTHPLPNVQVYDCGTAGMEVMFQARGTQRLIIVDASATGSEPGAVFKVP
SSELEALPEPSYSLHDFRWDNALAVGRKIFREDFPEDVTVYLIEAENLDFGLELSPVVQCSSEKVFQEIVNSFESKR

Sequences:

>Translated_157_residues
MLMLTIIGCGNFNRSDDGVGVIIAQRLQQYLSTHPLPNVQVYDCGTAGMEVMFQARGTQRLIIVDASATGSEPGAVFKVP
SSELEALPEPSYSLHDFRWDNALAVGRKIFREDFPEDVTVYLIEAENLDFGLELSPVVQCSSEKVFQEIVNSFESKR
>Mature_157_residues
MLMLTIIGCGNFNRSDDGVGVIIAQRLQQYLSTHPLPNVQVYDCGTAGMEVMFQARGTQRLIIVDASATGSEPGAVFKVP
SSELEALPEPSYSLHDFRWDNALAVGRKIFREDFPEDVTVYLIEAENLDFGLELSPVVQCSSEKVFQEIVNSFESKR

Specific function: Protease Involved In The C-Terminal Processing Of Hybc, The Large Subunit Of Hydrogenase 2. Specifically Cleaves Off A 15 Amino Acid Peptide From The C Terminus Of The Precursor Of Hybc. [C]

COG id: COG0680

COG function: function code C; Ni,Fe-hydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789367, Length=152, Percent_Identity=28.2894736842105, Blast_Score=63, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 17420; Mature: 17420

Theoretical pI: Translated: 4.28; Mature: 4.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMLTIIGCGNFNRSDDGVGVIIAQRLQQYLSTHPLPNVQVYDCGTAGMEVMFQARGTQR
CEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCEE
LIIVDASATGSEPGAVFKVPSSELEALPEPSYSLHDFRWDNALAVGRKIFREDFPEDVTV
EEEEECCCCCCCCCEEEECCCHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEE
YLIEAENLDFGLELSPVVQCSSEKVFQEIVNSFESKR
EEEEECCCCCCCCCHHHEECCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLMLTIIGCGNFNRSDDGVGVIIAQRLQQYLSTHPLPNVQVYDCGTAGMEVMFQARGTQR
CEEEEEEECCCCCCCCCCEEHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCCEE
LIIVDASATGSEPGAVFKVPSSELEALPEPSYSLHDFRWDNALAVGRKIFREDFPEDVTV
EEEEECCCCCCCCCEEEECCCHHHHCCCCCCCCCCEECCCCHHHHHHHHHHHCCCCCEEE
YLIEAENLDFGLELSPVVQCSSEKVFQEIVNSFESKR
EEEEECCCCCCCCCHHHEECCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA