| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is yfjP [C]
Identifier: 113476012
GI number: 113476012
Start: 3676730
End: 3678637
Strand: Direct
Name: yfjP [C]
Synonym: Tery_2380
Alternate gene names: 113476012
Gene position: 3676730-3678637 (Clockwise)
Preceding gene: 113476011
Following gene: 113476014
Centisome position: 47.44
GC content: 39.52
Gene sequence:
>1908_bases ATGGTAAAATTAAAAAAGTGGCACTTAGCAATACTCGCTATTCCCCCTCTTGCTGTAGTAGCCTTCCTAATGATATCCGC TGGCAGACAAATAAATAATTGGGGTATTAACTGGGTCTGGGGAATATTCATCCTTATTTTTGTCGGCTGGCGTAGGTTGC TAGTCAAATGGACTCGACCTACAGTTGCACAAATGGAAGAAGTAATAGCAGAAGTTAACAAAGAAATTCCCGCCATAGAC AACACGAGAAACCAACCTTTAGAAAACGAAGCCACTAAACAACTAGAGATCACTCTCCAAGAAATTATCAAATCATGCCG TAACGACCCTCCATTCTGGGAAGACTGGCAAATATTCTGGCAACGTTGTCAAGAAGTGGTGGCTGCTGTTGCTCATGCTT ACTATCCCGAAGTCAAATATCCTCTACTTAATATTTATATCCCTCAAGCTTACAGTTTAATTCGAGGTACTGTTGATGAC ATAGACAGATGGATACAAAAATTATCCCCTACCCTGAATCAAATAACTGTTGGTCAAGCATATCAGGGATATGAAATTTA TCGGAAGTTAGAACCCTCAGCTCGAAAACTTTTCCAAGTTTTGGGTTGGGCGCAATGGTTACTTAACCCTGTAGCAGCAG CCGCTAAAGTCGCAAGTCGCGGTTACAATGAACGAGCAAATCAGCAATTGTTGGCTAATTTGAGTCAAATATTGCGGGAA GTGGCGTTGCGAAATTTGTCTCAACAGGCGATCGCTATTTATGGAGGTAGTAAGTTAGAATTTTTAGACTCTGCTATTTC TACTCAGACTCTCCCGAAAGCAGAAACTAAAACTCTCGAACAAATTCTGGCACAAGCTCAACCGACGGAAACTGTTGAGC AAAAACCTGTTAATATTTTATTGGTGGGGCGTACGGGAGCAGGAAAAAGTAGTTTAATTAATACTCTATTTGCTGCAGAG CGTGCTGAGGTCGATGTGTTGCCAAGCACGGATGAAATTAAAAATTATCAGTGGCAAACTCAAATGGGAGAAATTCTTAA CCTTTGGGATACTCCTGGTTATGAACAAGTTAACCGTGCCGACCTGCGAGAATTGGTGCTTGACTATGCTAAAACTGTTG ATTTATTGTTGTTAGTTAACCCTGCTCTTGACCCTGCCTTGCAAATGGATATAGATTTTCTCCAAGATCTCAAAGGAGAA GTTGCTAATTTGCCTACTATTATAATTATAACCCAAGTCGACCGTTTACGACCGATACGGGAATGGCAACCACCTTATGA TTGGATCTGGGGCAAAAATGCTAAGGAAAAATCTATTCGGGAGGCGACTCAATATCGGGCAGAAATTTTGGGAGATTTTT GTAGTCAAGTTTTACCTGTTGTAACGGCGGATATTAAAAATAATAGAAATGGTTGGAATGTTGATGCCATATCTTTGTCA CTCTTAGAAGCTATTGCTCCTGCTAAACAACTACGTCTAGCTAAGTTTTTGTGCGATCGCAAAGCTCGTTCTGTAGCAGC AGCTCAAATTATTAACCATTATACTTTTCAAATGGCTACTACTCAAGGATTAACTGCTTTATTGAAAAGCCCAGTATTGC AGTTTATTTCTACTTTAACAACAGGTTCACCAGCTTTAGCTTATGTGCTAGCAGAAAAAATTCCTGTGGAAGATTTGCCT ATAGTTATTGGTAAATTACAGATGGCTTATGATTTATTTTCCTTATTGAGTGAGGATACAAATTTGGGCAGTTTTGATCT GTTAGCATTGTGGCCTTTATTATTAGAAAATCCTGCTGCACCAGACCTTAATGCTTGGGCATTTGGTCACGCTTTGGTAG AATATTGGATGCAGGATTTGAGTATTATACAATTGCAACAGCGGTTTAATAATTATTTAAAAATCTAA
Upstream 100 bases:
>100_bases TCAATAGACATCTACAAAAATGCTGGTTTTGTTACGTCAGCGTAAGGGCTTGAAAACCTTTCCTAGAGATGTCTAATATA CAAACTTAATACATCTCACT
Downstream 100 bases:
>100_bases TTATTCTCTAACTAAGAGGCTGTTTGAGAAGTACCACGAGGGGTTGATTAATCCTTTTGACAAACACCTCTTCCCTAACC TCCCACCACAACGGTTTGGG
Product: HSR1-related GTP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MVKLKKWHLAILAIPPLAVVAFLMISAGRQINNWGINWVWGIFILIFVGWRRLLVKWTRPTVAQMEEVIAEVNKEIPAID NTRNQPLENEATKQLEITLQEIIKSCRNDPPFWEDWQIFWQRCQEVVAAVAHAYYPEVKYPLLNIYIPQAYSLIRGTVDD IDRWIQKLSPTLNQITVGQAYQGYEIYRKLEPSARKLFQVLGWAQWLLNPVAAAAKVASRGYNERANQQLLANLSQILRE VALRNLSQQAIAIYGGSKLEFLDSAISTQTLPKAETKTLEQILAQAQPTETVEQKPVNILLVGRTGAGKSSLINTLFAAE RAEVDVLPSTDEIKNYQWQTQMGEILNLWDTPGYEQVNRADLRELVLDYAKTVDLLLLVNPALDPALQMDIDFLQDLKGE VANLPTIIIITQVDRLRPIREWQPPYDWIWGKNAKEKSIREATQYRAEILGDFCSQVLPVVTADIKNNRNGWNVDAISLS LLEAIAPAKQLRLAKFLCDRKARSVAAAQIINHYTFQMATTQGLTALLKSPVLQFISTLTTGSPALAYVLAEKIPVEDLP IVIGKLQMAYDLFSLLSEDTNLGSFDLLALWPLLLENPAAPDLNAWAFGHALVEYWMQDLSIIQLQQRFNNYLKI
Sequences:
>Translated_635_residues MVKLKKWHLAILAIPPLAVVAFLMISAGRQINNWGINWVWGIFILIFVGWRRLLVKWTRPTVAQMEEVIAEVNKEIPAID NTRNQPLENEATKQLEITLQEIIKSCRNDPPFWEDWQIFWQRCQEVVAAVAHAYYPEVKYPLLNIYIPQAYSLIRGTVDD IDRWIQKLSPTLNQITVGQAYQGYEIYRKLEPSARKLFQVLGWAQWLLNPVAAAAKVASRGYNERANQQLLANLSQILRE VALRNLSQQAIAIYGGSKLEFLDSAISTQTLPKAETKTLEQILAQAQPTETVEQKPVNILLVGRTGAGKSSLINTLFAAE RAEVDVLPSTDEIKNYQWQTQMGEILNLWDTPGYEQVNRADLRELVLDYAKTVDLLLLVNPALDPALQMDIDFLQDLKGE VANLPTIIIITQVDRLRPIREWQPPYDWIWGKNAKEKSIREATQYRAEILGDFCSQVLPVVTADIKNNRNGWNVDAISLS LLEAIAPAKQLRLAKFLCDRKARSVAAAQIINHYTFQMATTQGLTALLKSPVLQFISTLTTGSPALAYVLAEKIPVEDLP IVIGKLQMAYDLFSLLSEDTNLGSFDLLALWPLLLENPAAPDLNAWAFGHALVEYWMQDLSIIQLQQRFNNYLKI >Mature_635_residues MVKLKKWHLAILAIPPLAVVAFLMISAGRQINNWGINWVWGIFILIFVGWRRLLVKWTRPTVAQMEEVIAEVNKEIPAID NTRNQPLENEATKQLEITLQEIIKSCRNDPPFWEDWQIFWQRCQEVVAAVAHAYYPEVKYPLLNIYIPQAYSLIRGTVDD IDRWIQKLSPTLNQITVGQAYQGYEIYRKLEPSARKLFQVLGWAQWLLNPVAAAAKVASRGYNERANQQLLANLSQILRE VALRNLSQQAIAIYGGSKLEFLDSAISTQTLPKAETKTLEQILAQAQPTETVEQKPVNILLVGRTGAGKSSLINTLFAAE RAEVDVLPSTDEIKNYQWQTQMGEILNLWDTPGYEQVNRADLRELVLDYAKTVDLLLLVNPALDPALQMDIDFLQDLKGE VANLPTIIIITQVDRLRPIREWQPPYDWIWGKNAKEKSIREATQYRAEILGDFCSQVLPVVTADIKNNRNGWNVDAISLS LLEAIAPAKQLRLAKFLCDRKARSVAAAQIINHYTFQMATTQGLTALLKSPVLQFISTLTTGSPALAYVLAEKIPVEDLP IVIGKLQMAYDLFSLLSEDTNLGSFDLLALWPLLLENPAAPDLNAWAFGHALVEYWMQDLSIIQLQQRFNNYLKI
Specific function: Unknown
COG id: COG3596
COG function: function code R; Predicted GTPase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71960; Mature: 71960
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKLKKWHLAILAIPPLAVVAFLMISAGRQINNWGINWVWGIFILIFVGWRRLLVKWTRP CCEEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TVAQMEEVIAEVNKEIPAIDNTRNQPLENEATKQLEITLQEIIKSCRNDPPFWEDWQIFW HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH QRCQEVVAAVAHAYYPEVKYPLLNIYIPQAYSLIRGTVDDIDRWIQKLSPTLNQITVGQA HHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHCCHHHHEECCCC YQGYEIYRKLEPSARKLFQVLGWAQWLLNPVAAAAKVASRGYNERANQQLLANLSQILRE CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VALRNLSQQAIAIYGGSKLEFLDSAISTQTLPKAETKTLEQILAQAQPTETVEQKPVNIL HHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCCEEE LVGRTGAGKSSLINTLFAAERAEVDVLPSTDEIKNYQWQTQMGEILNLWDTPGYEQVNRA EEECCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH DLRELVLDYAKTVDLLLLVNPALDPALQMDIDFLQDLKGEVANLPTIIIITQVDRLRPIR HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCHH EWQPPYDWIWGKNAKEKSIREATQYRAEILGDFCSQVLPVVTADIKNNRNGWNVDAISLS HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LLEAIAPAKQLRLAKFLCDRKARSVAAAQIINHYTFQMATTQGLTALLKSPVLQFISTLT HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TGSPALAYVLAEKIPVEDLPIVIGKLQMAYDLFSLLSEDTNLGSFDLLALWPLLLENPAA CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC PDLNAWAFGHALVEYWMQDLSIIQLQQRFNNYLKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MVKLKKWHLAILAIPPLAVVAFLMISAGRQINNWGINWVWGIFILIFVGWRRLLVKWTRP CCEEEEEEEEEEECCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC TVAQMEEVIAEVNKEIPAIDNTRNQPLENEATKQLEITLQEIIKSCRNDPPFWEDWQIFW HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH QRCQEVVAAVAHAYYPEVKYPLLNIYIPQAYSLIRGTVDDIDRWIQKLSPTLNQITVGQA HHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHCCHHHHHHHHHHHCCHHHHEECCCC YQGYEIYRKLEPSARKLFQVLGWAQWLLNPVAAAAKVASRGYNERANQQLLANLSQILRE CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VALRNLSQQAIAIYGGSKLEFLDSAISTQTLPKAETKTLEQILAQAQPTETVEQKPVNIL HHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHCCCEEE LVGRTGAGKSSLINTLFAAERAEVDVLPSTDEIKNYQWQTQMGEILNLWDTPGYEQVNRA EEECCCCCHHHHHHHHHHHHHCCEECCCCCHHHHCCCHHHHHHHHHHHCCCCCHHHHHHH DLRELVLDYAKTVDLLLLVNPALDPALQMDIDFLQDLKGEVANLPTIIIITQVDRLRPIR HHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHCCCHH EWQPPYDWIWGKNAKEKSIREATQYRAEILGDFCSQVLPVVTADIKNNRNGWNVDAISLS HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH LLEAIAPAKQLRLAKFLCDRKARSVAAAQIINHYTFQMATTQGLTALLKSPVLQFISTLT HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC TGSPALAYVLAEKIPVEDLPIVIGKLQMAYDLFSLLSEDTNLGSFDLLALWPLLLENPAA CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCC PDLNAWAFGHALVEYWMQDLSIIQLQQRFNNYLKI CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA