| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475778
Identifier: 113475778
GI number: 113475778
Start: 3328892
End: 3330991
Strand: Direct
Name: 113475778
Synonym: Tery_2132
Alternate gene names: NA
Gene position: 3328892-3330991 (Clockwise)
Preceding gene: 113475777
Following gene: 113475779
Centisome position: 42.95
GC content: 29.86
Gene sequence:
>2100_bases ATGTCTAATAGTTATTATATTTATCGTATTCATCTGAAAAATCATCATAATGTGGAAATTGAAAGATATAATCATAAAAA AAAATTGCCAGGAAGCTCGTCTGGAAAGTTTTGTTATCAAGAAAAAGAAAAAGAAATTCAAAAGCTTTTGGAAGTTGCTA TTAATAATGAACTAAATGCAGAACAAACCAGTCAGTTGGGGGAAGCTTTATTTAATAGTTTATTTGATTCTAGATTATGC CAAGATTTTATTAATTTTTACTTTGAAGTTGTACAGAAAAAAAAGCAAAAATTACGAATAGAATTAGATATTGATGAAAA AGAAATGCCAGAATTTGCTGCTTTACCTTGGGAATTTTTATGTATTCCTGAAGAAGTTAATCAAGGTACGATTTGGTTAG GAACAGATCCTAATTTAATATTTTCTCGCCGTCGTGCTTTATGGAATTCTGCTAAGACAATACAATTAGAAAAAGATGAA AAATTGAGAATTGCTTTAGCTATTTCTGCACCTGAAAATGAAGGTCCTGTCGAATATGCAGAAGTACAAGAGTATTTAGA AGAGTTGGCTAAGAAACAATCTGAACAAATTGAATTATTACCTATAATAAATCCAGCTACAAAAATTGAAATTGATAGAT TATTAGAGAAAAAACCTCATATTTTTCATTTTATTGGTCATGGTCGTTTTGAGGATGAAGCAGAGAAAAAAGTAGGAAAA ATTGCTTTAGGAAAAAAAGTTGGAAAAAAAATATTAGCTAGATGGGTTAGTGAGAAATTCTTTGCTCAATTATTTGTTCG TCATCGTCCTGGTATTGTTGTTTTACAAGCTTGTGAAGGAGGAAAGCAGTCTGCATCTGAAGCTTTTAAGGGAGTTGCTT CTAAAATTGTGGCTCAAAGTATTCCTGTGGTAGTGGCAATGCAATATAAGGTACAGAATGCTACAGCTAATGCTTTTTCT ACGGAATTTTATAGGAGATTAGCAAAGGGTGAACCTGTTGATATTGCTGCTCAAAATGGTCGTCATGATGTGGCTTTACA AACTGATTATTCAGGTAATGATTTTGCTACACCTGTTATTTTTATGAGTGTAGAAGATGGTTGTTTATTTCAAAAGGAAG AGGTTCAAAAAAAAATAGTATCTGATTCTTTTTCGTTATCTGAAATAAACCCCAACCAAACGTTTAATATTATTGATGAT AATGTTGTGGAAAATCAGAAAAATCAGTGTCTTGATGATAATAATTATGTTTATTTGGCGATAGATTTAAAATTAGAAAG CACAAAAATTCAGAAAAATGATGCAGACAAATTCCTGGTTAATACATGGTTGGCAATTCCTCAATCTTCTCAAAGTTTTT ATCATAAAAATTTGTTAAATACTTTTGAATATAATCGAACTTATAGTCAGGCAGAGGTTGAAGAAAAAATTATGAAACTA ATTGCAGAATGTAATGAAGAATTAGCAAATATTTTCCCTCCAGAAAAAGATTGGGAGATTGCTATAGAATGGGTTCTTCC TAATAATTTATTATCTCTACCTGTTGACTGTTGGGAGTATCGAAAAAATGAAAGGATAGGACGTGGTAAATTTCTTTCTG TTCATATTCGTTCATCTCAACGTTTACACATAGCTTATAAACATTATCATAAATCATGGAAAGATAAATGGAACTATCTT CAGGGAAACATACAAAATATTAATTTGGGTAACTATATTTTAGCTTGCCAATGTCAAAATATTAATGATAATTATTTGAA AAATATTGATAATAAAAAGAAGATTCTGGGGATTAATTTCCCCTTCAAAATAGAAGAGTTAGAAAATATTACTTATGAGT TAATGATAGAAACAGGAATTCCTATAGCTTTGTGGTCTAGATGTAAAGAGTCTAATGTGAATCACCTTATAGATTTAGAT ACATTGATAAACCCCAATAATGAAAATGTTTTAAATCTACAAAATTTACCTGAATATGTGGAACAGAAGAGGTTAGACTC TCATTCAAATGACCCTCATCATTTAGGACATCATCTTTGCTTTTTATGTGAAAATCCTTATAATTATCCAATAAAAAGAA AATTAAATTTTGGGTATTAA
Upstream 100 bases:
>100_bases TTTCAGAGGTGACAATGAAAAGTGGGATTTAAAGCTGCCACAGTAAATGTATCTTGTTGTTTAGTTTGATATTTATTAAT TTTTAAATAAGTGTTGACTG
Downstream 100 bases:
>100_bases TTTAGTACTGTTTATTAGCTGACCTTGTGGGAAAAATTAATGGATTTGGTAGTAACATTTTATCAGTTTATTAATTTTGA AACCTGAAACATAACACCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 699; Mature: 698
Protein sequence:
>699_residues MSNSYYIYRIHLKNHHNVEIERYNHKKKLPGSSSGKFCYQEKEKEIQKLLEVAINNELNAEQTSQLGEALFNSLFDSRLC QDFINFYFEVVQKKKQKLRIELDIDEKEMPEFAALPWEFLCIPEEVNQGTIWLGTDPNLIFSRRRALWNSAKTIQLEKDE KLRIALAISAPENEGPVEYAEVQEYLEELAKKQSEQIELLPIINPATKIEIDRLLEKKPHIFHFIGHGRFEDEAEKKVGK IALGKKVGKKILARWVSEKFFAQLFVRHRPGIVVLQACEGGKQSASEAFKGVASKIVAQSIPVVVAMQYKVQNATANAFS TEFYRRLAKGEPVDIAAQNGRHDVALQTDYSGNDFATPVIFMSVEDGCLFQKEEVQKKIVSDSFSLSEINPNQTFNIIDD NVVENQKNQCLDDNNYVYLAIDLKLESTKIQKNDADKFLVNTWLAIPQSSQSFYHKNLLNTFEYNRTYSQAEVEEKIMKL IAECNEELANIFPPEKDWEIAIEWVLPNNLLSLPVDCWEYRKNERIGRGKFLSVHIRSSQRLHIAYKHYHKSWKDKWNYL QGNIQNINLGNYILACQCQNINDNYLKNIDNKKKILGINFPFKIEELENITYELMIETGIPIALWSRCKESNVNHLIDLD TLINPNNENVLNLQNLPEYVEQKRLDSHSNDPHHLGHHLCFLCENPYNYPIKRKLNFGY
Sequences:
>Translated_699_residues MSNSYYIYRIHLKNHHNVEIERYNHKKKLPGSSSGKFCYQEKEKEIQKLLEVAINNELNAEQTSQLGEALFNSLFDSRLC QDFINFYFEVVQKKKQKLRIELDIDEKEMPEFAALPWEFLCIPEEVNQGTIWLGTDPNLIFSRRRALWNSAKTIQLEKDE KLRIALAISAPENEGPVEYAEVQEYLEELAKKQSEQIELLPIINPATKIEIDRLLEKKPHIFHFIGHGRFEDEAEKKVGK IALGKKVGKKILARWVSEKFFAQLFVRHRPGIVVLQACEGGKQSASEAFKGVASKIVAQSIPVVVAMQYKVQNATANAFS TEFYRRLAKGEPVDIAAQNGRHDVALQTDYSGNDFATPVIFMSVEDGCLFQKEEVQKKIVSDSFSLSEINPNQTFNIIDD NVVENQKNQCLDDNNYVYLAIDLKLESTKIQKNDADKFLVNTWLAIPQSSQSFYHKNLLNTFEYNRTYSQAEVEEKIMKL IAECNEELANIFPPEKDWEIAIEWVLPNNLLSLPVDCWEYRKNERIGRGKFLSVHIRSSQRLHIAYKHYHKSWKDKWNYL QGNIQNINLGNYILACQCQNINDNYLKNIDNKKKILGINFPFKIEELENITYELMIETGIPIALWSRCKESNVNHLIDLD TLINPNNENVLNLQNLPEYVEQKRLDSHSNDPHHLGHHLCFLCENPYNYPIKRKLNFGY >Mature_698_residues SNSYYIYRIHLKNHHNVEIERYNHKKKLPGSSSGKFCYQEKEKEIQKLLEVAINNELNAEQTSQLGEALFNSLFDSRLCQ DFINFYFEVVQKKKQKLRIELDIDEKEMPEFAALPWEFLCIPEEVNQGTIWLGTDPNLIFSRRRALWNSAKTIQLEKDEK LRIALAISAPENEGPVEYAEVQEYLEELAKKQSEQIELLPIINPATKIEIDRLLEKKPHIFHFIGHGRFEDEAEKKVGKI ALGKKVGKKILARWVSEKFFAQLFVRHRPGIVVLQACEGGKQSASEAFKGVASKIVAQSIPVVVAMQYKVQNATANAFST EFYRRLAKGEPVDIAAQNGRHDVALQTDYSGNDFATPVIFMSVEDGCLFQKEEVQKKIVSDSFSLSEINPNQTFNIIDDN VVENQKNQCLDDNNYVYLAIDLKLESTKIQKNDADKFLVNTWLAIPQSSQSFYHKNLLNTFEYNRTYSQAEVEEKIMKLI AECNEELANIFPPEKDWEIAIEWVLPNNLLSLPVDCWEYRKNERIGRGKFLSVHIRSSQRLHIAYKHYHKSWKDKWNYLQ GNIQNINLGNYILACQCQNINDNYLKNIDNKKKILGINFPFKIEELENITYELMIETGIPIALWSRCKESNVNHLIDLDT LINPNNENVLNLQNLPEYVEQKRLDSHSNDPHHLGHHLCFLCENPYNYPIKRKLNFGY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81141; Mature: 81010
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSYYIYRIHLKNHHNVEIERYNHKKKLPGSSSGKFCYQEKEKEIQKLLEVAINNELNA CCCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH EQTSQLGEALFNSLFDSRLCQDFINFYFEVVQKKKQKLRIELDIDEKEMPEFAALPWEFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHCCHHHCCCEEEE CIPEEVNQGTIWLGTDPNLIFSRRRALWNSAKTIQLEKDEKLRIALAISAPENEGPVEYA EEHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEEECCCCCCCCCHH EVQEYLEELAKKQSEQIELLPIINPATKIEIDRLLEKKPHIFHFIGHGRFEDEAEKKVGK HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH IALGKKVGKKILARWVSEKFFAQLFVRHRPGIVVLQACEGGKQSASEAFKGVASKIVAQS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC IPVVVAMQYKVQNATANAFSTEFYRRLAKGEPVDIAAQNGRHDVALQTDYSGNDFATPVI CCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEE FMSVEDGCLFQKEEVQKKIVSDSFSLSEINPNQTFNIIDDNVVENQKNQCLDDNNYVYLA EEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCEEEEE IDLKLESTKIQKNDADKFLVNTWLAIPQSSQSFYHKNLLNTFEYNRTYSQAEVEEKIMKL EEEEEECCCCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH IAECNEELANIFPPEKDWEIAIEWVLPNNLLSLPVDCWEYRKNERIGRGKFLSVHIRSSQ HHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCHHHHHHCCCCCCCCCEEEEEECCCC RLHIAYKHYHKSWKDKWNYLQGNIQNINLGNYILACQCQNINDNYLKNIDNKKKILGINF EEEEEHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHCCCCCCEEEEECC PFKIEELENITYELMIETGIPIALWSRCKESNVNHLIDLDTLINPNNENVLNLQNLPEYV CEEHHHHHCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEHHEECCCCCCEEEHHHHHHHH EQKRLDSHSNDPHHLGHHLCFLCENPYNYPIKRKLNFGY HHHHCCCCCCCHHHHCCEEEEEECCCCCCCCEECCCCCC >Mature Secondary Structure SNSYYIYRIHLKNHHNVEIERYNHKKKLPGSSSGKFCYQEKEKEIQKLLEVAINNELNA CCCEEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCH EQTSQLGEALFNSLFDSRLCQDFINFYFEVVQKKKQKLRIELDIDEKEMPEFAALPWEFL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCHHHCCHHHCCCEEEE CIPEEVNQGTIWLGTDPNLIFSRRRALWNSAKTIQLEKDEKLRIALAISAPENEGPVEYA EEHHHCCCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCEEEEEEEECCCCCCCCCHH EVQEYLEELAKKQSEQIELLPIINPATKIEIDRLLEKKPHIFHFIGHGRFEDEAEKKVGK HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH IALGKKVGKKILARWVSEKFFAQLFVRHRPGIVVLQACEGGKQSASEAFKGVASKIVAQS HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHC IPVVVAMQYKVQNATANAFSTEFYRRLAKGEPVDIAAQNGRHDVALQTDYSGNDFATPVI CCEEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEECCCCCCCCCEEE FMSVEDGCLFQKEEVQKKIVSDSFSLSEINPNQTFNIIDDNVVENQKNQCLDDNNYVYLA EEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCEEEEE IDLKLESTKIQKNDADKFLVNTWLAIPQSSQSFYHKNLLNTFEYNRTYSQAEVEEKIMKL EEEEEECCCCCCCCCCHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH IAECNEELANIFPPEKDWEIAIEWVLPNNLLSLPVDCWEYRKNERIGRGKFLSVHIRSSQ HHHHHHHHHHCCCCCCCCEEEEEEEECCCCEECCCHHHHHHCCCCCCCCCEEEEEECCCC RLHIAYKHYHKSWKDKWNYLQGNIQNINLGNYILACQCQNINDNYLKNIDNKKKILGINF EEEEEHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHCCCCCCEEEEECC PFKIEELENITYELMIETGIPIALWSRCKESNVNHLIDLDTLINPNNENVLNLQNLPEYV CEEHHHHHCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEHHEECCCCCCEEEHHHHHHHH EQKRLDSHSNDPHHLGHHLCFLCENPYNYPIKRKLNFGY HHHHCCCCCCCHHHHCCEEEEEECCCCCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA