| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475365
Identifier: 113475365
GI number: 113475365
Start: 2563253
End: 2564455
Strand: Reverse
Name: 113475365
Synonym: Tery_1682
Alternate gene names: NA
Gene position: 2564455-2563253 (Counterclockwise)
Preceding gene: 113475366
Following gene: 113475364
Centisome position: 33.09
GC content: 33.08
Gene sequence:
>1203_bases ATGATAAAGCTAAAAACTTGGGCAGTAAATATAGGCATGATTTTTGCCAGTTTATTTGTAGGGATAGCGATGGCTGAAGT AGCAGTAAGAATTGCTGGTTTAAAGGGATTAAAAAAAATGCCTGAAAGTACCCATGCAGAATTTTATCCCACATTTCATA CCATTCCTCATCCGGTTAGAGGTTGGGAATATAGAGCAAATGTTTCTGGCTGGTGGACGAGTGAAGGAAAGGCTTATTTA GAGTTTAATAGTCATGGTATTAGAGGACCAGAAATTACTAAAGCTAAACCAAAAAATACTTTGCGAATAGCTGTACTTGG AGATTCTTTTACTTCAGCTGTCCAAGTTTCTTATCAGCAAACTTTTGTAGGAGTAATGCAAAAAGAATTGCAAAAATGTA CGAATTTAAAAAATAAAAAAGTAGAAGTAATTAATTTTGGCGTTGATGGTTATGGAACTGCCCAACAATTATTAACTCTC CGGGAAAAAGTTTGGGATTTTCAGCCAGATATTGTGCTTTTAGCTTTTTTTATTGGTAATGATGTTACGGATAATTCTCG AAAGTTAGAAAATAATCATTACCGACCTTTTTTTATCTATAAAAATGATAAGTTAGAGTTAGATTTATCCTTTAGAGAGC TAACTATTAGTCAGGCAAATCGTTATATGATAACAACGGTTGATAAATTACCGACTTGGCTGATAAATAATGTTAGAATT TTACAAATAATCAAAAAAGTAGAGACAGATCAAAGAAAGAGAAATGCTGCTAGACACTTTGAAAAATTACAAGCCAATAA TTTTAGAGAACCACGAAATCTTGCTTGGCAAGAAGCTTGGAAAATTACAGATGAACTAATAGGAATTATGGCTAAAGAAG TGCAGGAAAAAGGCGCAGAATTTCAGTTGGCGACAGTGATGACTCCTATGCAAATTCATTCCAATAAAGGATGGAGAGAA GGATATATGAAAATTATGGATATTCAAGACTGGTCGTATCCCACAAAAAGACTGCAAAATTTAGGAGAAATTCATAATTT TTATGTGATTGATTTAATCAAACCTTTTGATGATTATATTGAGAAAAATCCAGTTTGTTTTCATGGGTTTAAAAATACAG CAATGTGTACAGGACATTGGAATGCTACAGGGCATAAATTAGCTGGAGAAATTATTGCAAAAAAGTCATGTCAGAGGTTT TAA
Upstream 100 bases:
>100_bases ATTAAAAACAATAGCTGATAGCTTTATAGCTGAAAACAGAATAGACTGAATATTATTCAACTTTTATGATTAAATTACAA AAAAAATTATAGCTAAGAGG
Downstream 100 bases:
>100_bases AAAAAAATTGTAGGTATAGGTAGTTAATAGTAGATTTGAAGTCAAAAAAACTTAGACTGCTATTCAAATTATGTAGAGTA TATTGCATCTAATGATTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 400; Mature: 400
Protein sequence:
>400_residues MIKLKTWAVNIGMIFASLFVGIAMAEVAVRIAGLKGLKKMPESTHAEFYPTFHTIPHPVRGWEYRANVSGWWTSEGKAYL EFNSHGIRGPEITKAKPKNTLRIAVLGDSFTSAVQVSYQQTFVGVMQKELQKCTNLKNKKVEVINFGVDGYGTAQQLLTL REKVWDFQPDIVLLAFFIGNDVTDNSRKLENNHYRPFFIYKNDKLELDLSFRELTISQANRYMITTVDKLPTWLINNVRI LQIIKKVETDQRKRNAARHFEKLQANNFREPRNLAWQEAWKITDELIGIMAKEVQEKGAEFQLATVMTPMQIHSNKGWRE GYMKIMDIQDWSYPTKRLQNLGEIHNFYVIDLIKPFDDYIEKNPVCFHGFKNTAMCTGHWNATGHKLAGEIIAKKSCQRF
Sequences:
>Translated_400_residues MIKLKTWAVNIGMIFASLFVGIAMAEVAVRIAGLKGLKKMPESTHAEFYPTFHTIPHPVRGWEYRANVSGWWTSEGKAYL EFNSHGIRGPEITKAKPKNTLRIAVLGDSFTSAVQVSYQQTFVGVMQKELQKCTNLKNKKVEVINFGVDGYGTAQQLLTL REKVWDFQPDIVLLAFFIGNDVTDNSRKLENNHYRPFFIYKNDKLELDLSFRELTISQANRYMITTVDKLPTWLINNVRI LQIIKKVETDQRKRNAARHFEKLQANNFREPRNLAWQEAWKITDELIGIMAKEVQEKGAEFQLATVMTPMQIHSNKGWRE GYMKIMDIQDWSYPTKRLQNLGEIHNFYVIDLIKPFDDYIEKNPVCFHGFKNTAMCTGHWNATGHKLAGEIIAKKSCQRF >Mature_400_residues MIKLKTWAVNIGMIFASLFVGIAMAEVAVRIAGLKGLKKMPESTHAEFYPTFHTIPHPVRGWEYRANVSGWWTSEGKAYL EFNSHGIRGPEITKAKPKNTLRIAVLGDSFTSAVQVSYQQTFVGVMQKELQKCTNLKNKKVEVINFGVDGYGTAQQLLTL REKVWDFQPDIVLLAFFIGNDVTDNSRKLENNHYRPFFIYKNDKLELDLSFRELTISQANRYMITTVDKLPTWLINNVRI LQIIKKVETDQRKRNAARHFEKLQANNFREPRNLAWQEAWKITDELIGIMAKEVQEKGAEFQLATVMTPMQIHSNKGWRE GYMKIMDIQDWSYPTKRLQNLGEIHNFYVIDLIKPFDDYIEKNPVCFHGFKNTAMCTGHWNATGHKLAGEIIAKKSCQRF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46245; Mature: 46245
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00041 HTH_ARAC_FAMILY_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIKLKTWAVNIGMIFASLFVGIAMAEVAVRIAGLKGLKKMPESTHAEFYPTFHTIPHPVR CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GWEYRANVSGWWTSEGKAYLEFNSHGIRGPEITKAKPKNTLRIAVLGDSFTSAVQVSYQQ CCEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH TFVGVMQKELQKCTNLKNKKVEVINFGVDGYGTAQQLLTLREKVWDFQPDIVLLAFFIGN HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHEEEEHHCC DVTDNSRKLENNHYRPFFIYKNDKLELDLSFRELTISQANRYMITTVDKLPTWLINNVRI CCCCCCHHHCCCCCCEEEEEECCEEEEEEEHHHEEHHCCCCEEEEEHHHCCHHHHCCHHH LQIIKKVETDQRKRNAARHFEKLQANNFREPRNLAWQEAWKITDELIGIMAKEVQEKGAE HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FQLATVMTPMQIHSNKGWREGYMKIMDIQDWSYPTKRLQNLGEIHNFYVIDLIKPFDDYI EEEEEECCCHHCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEEEHHHHHHH EKNPVCFHGFKNTAMCTGHWNATGHKLAGEIIAKKSCQRF CCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC >Mature Secondary Structure MIKLKTWAVNIGMIFASLFVGIAMAEVAVRIAGLKGLKKMPESTHAEFYPTFHTIPHPVR CEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC GWEYRANVSGWWTSEGKAYLEFNSHGIRGPEITKAKPKNTLRIAVLGDSFTSAVQVSYQQ CCEEEECCCEEEECCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHH TFVGVMQKELQKCTNLKNKKVEVINFGVDGYGTAQQLLTLREKVWDFQPDIVLLAFFIGN HHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCHHEEEEHHCC DVTDNSRKLENNHYRPFFIYKNDKLELDLSFRELTISQANRYMITTVDKLPTWLINNVRI CCCCCCHHHCCCCCCEEEEEECCEEEEEEEHHHEEHHCCCCEEEEEHHHCCHHHHCCHHH LQIIKKVETDQRKRNAARHFEKLQANNFREPRNLAWQEAWKITDELIGIMAKEVQEKGAE HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC FQLATVMTPMQIHSNKGWREGYMKIMDIQDWSYPTKRLQNLGEIHNFYVIDLIKPFDDYI EEEEEECCCHHCCCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHHCEEEEEEEHHHHHHH EKNPVCFHGFKNTAMCTGHWNATGHKLAGEIIAKKSCQRF CCCCEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA