| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475364
Identifier: 113475364
GI number: 113475364
Start: 2561721
End: 2562938
Strand: Reverse
Name: 113475364
Synonym: Tery_1681
Alternate gene names: NA
Gene position: 2562938-2561721 (Counterclockwise)
Preceding gene: 113475365
Following gene: 113475363
Centisome position: 33.07
GC content: 32.27
Gene sequence:
>1218_bases ATGAAAAAACTGAATAATTTACTCATAAATATTGGATTAATATTTGTAGCCTTAATAACTGGTATTTTGGCAGGAGAAAT AGGATTAAGGGTAGCAAAAATAGAAGGATTGAAAAAAGCCAACAATAACGAACCCCACAGACCTACCATATTTCATACTC ATGATCCTCATCGTGGTTGGGCATTACAACCGGGTTTCACTGCTTGGTGGCGAGAGGAGGGGGAAGCTTATATAGAAATT AATAGCGATGGTTTAAGAGACCGCGAATATAGTAAAATTAAGCCAAAAAATACATTAAGAATTGCTATATTAGGAGATTC TTTTGCTGAAGCGGTTCAAGTACCAATAGAGAAAACTTTTTGGTCAATAATTGAACAGAAATTGACAAAATGTGACTCTA TTGCTAATAGAAAAGTTGAGGTAATTAATTTTGGGGTTCATGGTTATAGCACCTTGCAAGAACTGTTGACTTTACGTCAT CAGGTTTGGGATTATAATCCAGATATTATATTGTTAGCTTTTTTTATAGGAAATGATATTATTAATAACTCAAAAAAACT GGAGTATAGTCAATATAGACCATTTCTTATATATGAAAATGGAGAGTTGGTTGTCGATATGTCTTTTCAGGATTTAATTC CAGCTCTAAGTAATCGCTATGTTGTTTCATTTATAGACAAAATACCTGGTTGGCTGGTAAATAATTCCAGAATCTTGCAA GTAGTAAAAAAAGTAGATTTGAATCTAAAGAAAAAAAAATTAGACGCATATTTTATGGGTTTAGTACCGTATAATTTTCA GCCACCAATCAATAATAATTGGCATCAAGCATGGGAAATTACAGAAGAATTAATCACATTAATAGCAGCAGAGGTGAGAG AAAGAGAAAAAGATTTTTTGGCAGTATTAGTAGGAGATCCAAAACAGGTACATTACGACCAACCATATCTACAAAAAACT TTTATGAAACAATACAATATTAATGATATGTTGTATCCCAATAAAAGAATAGAAGCTCTGGGCGATCGCTTAGGTTTTCC AGTATTAGATTTAGTAGTACCTTTTCGAGATTATGCTGTGGAAAATCAAGCTTGTTTACACGGTTTTGAAAATACATCAT TATGTATTGGGCATTGGAACATAGAAGGGCATCAATTAGCAGGAGAAATTATTACTAATAACCTCTGCAAACAGTTCAAA TTTAATTATAATCAATAA
Upstream 100 bases:
>100_bases ATAAAGTAAATCATTTTTTTTTCCATAAATTTCTACTCTCCAGTAACTTAATTTGTCCTCAATATGAAAAATAATTTCTT GCTTAGTAAACCTTTATAAA
Downstream 100 bases:
>100_bases TGAAAAAGCTACATAATTTAGCCATCAATTTAGGATTAATATTAGGTACATTAATATTTACTTTAACAGTAGGTGAAATA GGATTAAGAATAGCAGGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 405; Mature: 405
Protein sequence:
>405_residues MKKLNNLLINIGLIFVALITGILAGEIGLRVAKIEGLKKANNNEPHRPTIFHTHDPHRGWALQPGFTAWWREEGEAYIEI NSDGLRDREYSKIKPKNTLRIAILGDSFAEAVQVPIEKTFWSIIEQKLTKCDSIANRKVEVINFGVHGYSTLQELLTLRH QVWDYNPDIILLAFFIGNDIINNSKKLEYSQYRPFLIYENGELVVDMSFQDLIPALSNRYVVSFIDKIPGWLVNNSRILQ VVKKVDLNLKKKKLDAYFMGLVPYNFQPPINNNWHQAWEITEELITLIAAEVREREKDFLAVLVGDPKQVHYDQPYLQKT FMKQYNINDMLYPNKRIEALGDRLGFPVLDLVVPFRDYAVENQACLHGFENTSLCIGHWNIEGHQLAGEIITNNLCKQFK FNYNQ
Sequences:
>Translated_405_residues MKKLNNLLINIGLIFVALITGILAGEIGLRVAKIEGLKKANNNEPHRPTIFHTHDPHRGWALQPGFTAWWREEGEAYIEI NSDGLRDREYSKIKPKNTLRIAILGDSFAEAVQVPIEKTFWSIIEQKLTKCDSIANRKVEVINFGVHGYSTLQELLTLRH QVWDYNPDIILLAFFIGNDIINNSKKLEYSQYRPFLIYENGELVVDMSFQDLIPALSNRYVVSFIDKIPGWLVNNSRILQ VVKKVDLNLKKKKLDAYFMGLVPYNFQPPINNNWHQAWEITEELITLIAAEVREREKDFLAVLVGDPKQVHYDQPYLQKT FMKQYNINDMLYPNKRIEALGDRLGFPVLDLVVPFRDYAVENQACLHGFENTSLCIGHWNIEGHQLAGEIITNNLCKQFK FNYNQ >Mature_405_residues MKKLNNLLINIGLIFVALITGILAGEIGLRVAKIEGLKKANNNEPHRPTIFHTHDPHRGWALQPGFTAWWREEGEAYIEI NSDGLRDREYSKIKPKNTLRIAILGDSFAEAVQVPIEKTFWSIIEQKLTKCDSIANRKVEVINFGVHGYSTLQELLTLRH QVWDYNPDIILLAFFIGNDIINNSKKLEYSQYRPFLIYENGELVVDMSFQDLIPALSNRYVVSFIDKIPGWLVNNSRILQ VVKKVDLNLKKKKLDAYFMGLVPYNFQPPINNNWHQAWEITEELITLIAAEVREREKDFLAVLVGDPKQVHYDQPYLQKT FMKQYNINDMLYPNKRIEALGDRLGFPVLDLVVPFRDYAVENQACLHGFENTSLCIGHWNIEGHQLAGEIITNNLCKQFK FNYNQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46859; Mature: 46859
Theoretical pI: Translated: 7.11; Mature: 7.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLNNLLINIGLIFVALITGILAGEIGLRVAKIEGLKKANNNEPHRPTIFHTHDPHRGW CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHCHHHCCCCCCCCCEEEECCCCCCCC ALQPGFTAWWREEGEAYIEINSDGLRDREYSKIKPKNTLRIAILGDSFAEAVQVPIEKTF EECCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHH WSIIEQKLTKCDSIANRKVEVINFGVHGYSTLQELLTLRHQVWDYNPDIILLAFFIGNDI HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCHH INNSKKLEYSQYRPFLIYENGELVVDMSFQDLIPALSNRYVVSFIDKIPGWLVNNSRILQ HCCCCCCCHHCCCCEEEEECCCEEEECCHHHHHHHHCCCHHHHHHHHCCCEEECCHHHHH VVKKVDLNLKKKKLDAYFMGLVPYNFQPPINNNWHQAWEITEELITLIAAEVREREKDFL HHHHHCCCCHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE AVLVGDPKQVHYDQPYLQKTFMKQYNINDMLYPNKRIEALGDRLGFPVLDLVVPFRDYAV EEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHC ENQACLHGFENTSLCIGHWNIEGHQLAGEIITNNLCKQFKFNYNQ CCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MKKLNNLLINIGLIFVALITGILAGEIGLRVAKIEGLKKANNNEPHRPTIFHTHDPHRGW CCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEHHCHHHCCCCCCCCCEEEECCCCCCCC ALQPGFTAWWREEGEAYIEINSDGLRDREYSKIKPKNTLRIAILGDSFAEAVQVPIEKTF EECCCCHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHH WSIIEQKLTKCDSIANRKVEVINFGVHGYSTLQELLTLRHQVWDYNPDIILLAFFIGNDI HHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEHHCCHH INNSKKLEYSQYRPFLIYENGELVVDMSFQDLIPALSNRYVVSFIDKIPGWLVNNSRILQ HCCCCCCCHHCCCCEEEEECCCEEEECCHHHHHHHHCCCHHHHHHHHCCCEEECCHHHHH VVKKVDLNLKKKKLDAYFMGLVPYNFQPPINNNWHQAWEITEELITLIAAEVREREKDFL HHHHHCCCCHHHHHCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE AVLVGDPKQVHYDQPYLQKTFMKQYNINDMLYPNKRIEALGDRLGFPVLDLVVPFRDYAV EEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHC ENQACLHGFENTSLCIGHWNIEGHQLAGEIITNNLCKQFKFNYNQ CCHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA