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The map label for this gene is rimN [H]

Identifier: 113475329

GI number: 113475329

Start: 2507251

End: 2507844

Strand: Direct

Name: rimN [H]

Synonym: Tery_1643

Alternate gene names: 113475329

Gene position: 2507251-2507844 (Clockwise)

Preceding gene: 113475328

Following gene: 113475330

Centisome position: 32.35

GC content: 41.75

Gene sequence:

>594_bases
ATGAGTTTAGTATCTATTGAGACTCTTATTGAGGGAGCAATATCTGGTAATTTAGTTAGCTTTCCTACTGATACTGTACC
AGCACTGGCAGCTCGACCTGATCGAGCAAATTTAATTTTTCAAGTAAAGGGTCGTAGTCAAGATAAACCTGTGATTTTAA
TGGGGGCAAATGCTGCATCTTTGTGGCCTTATATTTGTGGAAGTGATCAAGAGTTACAGTTATGGCAAAGGGTGGCTGGA
AAGTATTGGCCTGGGCAGTTGACTTTGGTGCTACCTGCTTCAGAAATGGTGCCCAGGGTAATGAATCCTGTTGAGGGAAC
TACTATTGGAGTCAGGGTTCCTAATTGTGATATTGCTAGAAAAATAATGGCTCGAACAGGGCCTTTAGCTACTACAAGTG
CTAATATTTCTGGCCAGCCAACTTTAGGGAAAATGGCGGAAATTAGTCGTCAATTTCCAGAGGTTTTGGTTGTTTCGTTG
TCCCAAAGTGAGGAGATAATGTTAACTTCTGGAGTCCCTTCGACTGTTGCTAAGTGGAATGGAATTGCTCGTTGGGAAAT
TTTGCGCCAGGGAGCAGTAAAGTTAAAATTTTAA

Upstream 100 bases:

>100_bases
ATTATCATTTTTTTAAGCTCCTAAAGTTACAGTTGTTTTGTGCTAGAGATATTAAAGTTAGTTATATTTTTAAAAAATTA
AAAAATAAAAAACGAAAAAA

Downstream 100 bases:

>100_bases
GGTACTCTCAAAACATTTAGTATTTTTATTGGAATGGCTGGGAACAATTTTATTTATTTGGTACTAGGGTTTGGATTTGG
GTTACTAGCTAGTAGGTTAT

Product: SUA5/yciO/yrdC-like

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN [H]

Number of amino acids: Translated: 197; Mature: 196

Protein sequence:

>197_residues
MSLVSIETLIEGAISGNLVSFPTDTVPALAARPDRANLIFQVKGRSQDKPVILMGANAASLWPYICGSDQELQLWQRVAG
KYWPGQLTLVLPASEMVPRVMNPVEGTTIGVRVPNCDIARKIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSL
SQSEEIMLTSGVPSTVAKWNGIARWEILRQGAVKLKF

Sequences:

>Translated_197_residues
MSLVSIETLIEGAISGNLVSFPTDTVPALAARPDRANLIFQVKGRSQDKPVILMGANAASLWPYICGSDQELQLWQRVAG
KYWPGQLTLVLPASEMVPRVMNPVEGTTIGVRVPNCDIARKIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSL
SQSEEIMLTSGVPSTVAKWNGIARWEILRQGAVKLKF
>Mature_196_residues
SLVSIETLIEGAISGNLVSFPTDTVPALAARPDRANLIFQVKGRSQDKPVILMGANAASLWPYICGSDQELQLWQRVAGK
YWPGQLTLVLPASEMVPRVMNPVEGTTIGVRVPNCDIARKIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSLS
QSEEIMLTSGVPSTVAKWNGIARWEILRQGAVKLKF

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine [H]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=140, Percent_Identity=32.8571428571429, Blast_Score=61, Evalue=5e-11,
Organism=Drosophila melanogaster, GI78707274, Length=189, Percent_Identity=29.6296296296296, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 21299; Mature: 21168

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLVSIETLIEGAISGNLVSFPTDTVPALAARPDRANLIFQVKGRSQDKPVILMGANAAS
CCEEHHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCCEEEEECCCCCCCCEEEECCCHHH
LWPYICGSDQELQLWQRVAGKYWPGQLTLVLPASEMVPRVMNPVEGTTIGVRVPNCDIAR
HCCEECCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHH
KIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSLSQSEEIMLTSGVPSTVAKWN
HHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHC
GIARWEILRQGAVKLKF
CCHHHHHHHCCCEEECC
>Mature Secondary Structure 
SLVSIETLIEGAISGNLVSFPTDTVPALAARPDRANLIFQVKGRSQDKPVILMGANAAS
CEEHHHHHHHHHHCCCEEECCCCCCCHHHCCCCCCCEEEEECCCCCCCCEEEECCCHHH
LWPYICGSDQELQLWQRVAGKYWPGQLTLVLPASEMVPRVMNPVEGTTIGVRVPNCDIAR
HCCEECCCCCHHHHHHHHHCCCCCCEEEEEECCHHHHHHHCCCCCCCEEEEECCCCHHHH
KIMARTGPLATTSANISGQPTLGKMAEISRQFPEVLVVSLSQSEEIMLTSGVPSTVAKWN
HHHHHCCCCEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCEEEEECCCCHHHHHHC
GIARWEILRQGAVKLKF
CCHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA