Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

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The map label for this gene is 113475307

Identifier: 113475307

GI number: 113475307

Start: 2471985

End: 2472380

Strand: Direct

Name: 113475307

Synonym: Tery_1616

Alternate gene names: NA

Gene position: 2471985-2472380 (Clockwise)

Preceding gene: 113475306

Following gene: 113475308

Centisome position: 31.9

GC content: 36.36

Gene sequence:

>396_bases
ATGGACGCAACTGCCCTTTTTAACATAATATTACGACTGGCAATTTGGTTTTTACTCACCACCGACTTAAGTTGGGAAAA
TACGATTATTGGTGTTAGTGTTGCTTGTTTATTGCCCCATAAAAAAACATCTCTGGGATTATTAAGTGATTGGCTGCGAG
TCATATGGGAAATTATCGTCGCCATTCCTCAATCTTATATTGAAGCAATACAAATGATGCTTCATCCCCATGATGAAGAA
GTTGTGGTTTGGGAACATCTTAAAACACAACGAACACCTCAATTGATTTTTCTAGATATATTTTTGATTACCTTTACTCC
CAAAACTATTGTCTTTAAATATAACGAAGGGGGGTGGTATGAAGTACACCGAGTGAAACCGAAGAGAAAAAAATGA

Upstream 100 bases:

>100_bases
TTTTTCAGAAATTGGCGATTAAGTTACCAAGGTCGATGGAAGAATTTGACCATCTGATTGGGTTTATGAGCCTAATGTTA
ATTTTACTATTCTGGATGAT

Downstream 100 bases:

>100_bases
AGTATATTTTAATTGTTATGAGTTTGTCTGTGCTCATACCCATTTATGAAGCCTGGCAGGATGACGATATTTGGCAGAAA
ATGCTGGCTTTTAGTAGTAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MDATALFNIILRLAIWFLLTTDLSWENTIIGVSVACLLPHKKTSLGLLSDWLRVIWEIIVAIPQSYIEAIQMMLHPHDEE
VVVWEHLKTQRTPQLIFLDIFLITFTPKTIVFKYNEGGWYEVHRVKPKRKK

Sequences:

>Translated_131_residues
MDATALFNIILRLAIWFLLTTDLSWENTIIGVSVACLLPHKKTSLGLLSDWLRVIWEIIVAIPQSYIEAIQMMLHPHDEE
VVVWEHLKTQRTPQLIFLDIFLITFTPKTIVFKYNEGGWYEVHRVKPKRKK
>Mature_131_residues
MDATALFNIILRLAIWFLLTTDLSWENTIIGVSVACLLPHKKTSLGLLSDWLRVIWEIIVAIPQSYIEAIQMMLHPHDEE
VVVWEHLKTQRTPQLIFLDIFLITFTPKTIVFKYNEGGWYEVHRVKPKRKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15384; Mature: 15384

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDATALFNIILRLAIWFLLTTDLSWENTIIGVSVACLLPHKKTSLGLLSDWLRVIWEIIV
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
AIPQSYIEAIQMMLHPHDEEVVVWEHLKTQRTPQLIFLDIFLITFTPKTIVFKYNEGGWY
HCCHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCEE
EVHRVKPKRKK
EEEECCCCCCC
>Mature Secondary Structure
MDATALFNIILRLAIWFLLTTDLSWENTIIGVSVACLLPHKKTSLGLLSDWLRVIWEIIV
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHH
AIPQSYIEAIQMMLHPHDEEVVVWEHLKTQRTPQLIFLDIFLITFTPKTIVFKYNEGGWY
HCCHHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCEE
EVHRVKPKRKK
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA