Definition Trichodesmium erythraeum IMS101 chromosome, complete genome.
Accession NC_008312
Length 7,750,108

Click here to switch to the map view.

The map label for this gene is 113475290

Identifier: 113475290

GI number: 113475290

Start: 2447092

End: 2447358

Strand: Direct

Name: 113475290

Synonym: Tery_1599

Alternate gene names: NA

Gene position: 2447092-2447358 (Clockwise)

Preceding gene: 113475288

Following gene: 113475291

Centisome position: 31.57

GC content: 34.83

Gene sequence:

>267_bases
ATGCCTTGGTTTGCCAAAATAGAAAAAGGTATAGTCGAAAAAGCCATATTTGATAAATATGTACCAGGCCACATAGCCTA
TGTCCAAAATTTAATTGCTAAAGGACATAAAGCTAAAAGTGGTTACTGGGGAAAACTAGGAGGAGGAATGTTAATATTCG
AGGCTTCATCTATGGCAGAAGCTGAAAAAATAGTAGCCGAAGACCCCCTAATTAAAAATAATTGTGTAACTTATGAAATT
TATCAGTGGTACATAGTTGCAGAATAA

Upstream 100 bases:

>100_bases
TACTCCTTAATTTCGGTAACTTGGTTTTGAATATTTTCAGGTGGCACAAGAGCCACAAATAATAGACATTTTGATAGACC
CATAAAATTCCTTAATAAAA

Downstream 100 bases:

>100_bases
AAAAATGTGTTATAGTAGTTAATGATTCGGACCAGCGCGATTACAACACCTAAACCTTGTCAGGACCGGAAGGTAGCAGC
AACACGGGATGCTTGTAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MPWFAKIEKGIVEKAIFDKYVPGHIAYVQNLIAKGHKAKSGYWGKLGGGMLIFEASSMAEAEKIVAEDPLIKNNCVTYEI
YQWYIVAE

Sequences:

>Translated_88_residues
MPWFAKIEKGIVEKAIFDKYVPGHIAYVQNLIAKGHKAKSGYWGKLGGGMLIFEASSMAEAEKIVAEDPLIKNNCVTYEI
YQWYIVAE
>Mature_87_residues
PWFAKIEKGIVEKAIFDKYVPGHIAYVQNLIAKGHKAKSGYWGKLGGGMLIFEASSMAEAEKIVAEDPLIKNNCVTYEIY
QWYIVAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9912; Mature: 9780

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPWFAKIEKGIVEKAIFDKYVPGHIAYVQNLIAKGHKAKSGYWGKLGGGMLIFEASSMAE
CCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHH
AEKIVAEDPLIKNNCVTYEIYQWYIVAE
HHHHHHCCCCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure 
PWFAKIEKGIVEKAIFDKYVPGHIAYVQNLIAKGHKAKSGYWGKLGGGMLIFEASSMAE
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCHHH
AEKIVAEDPLIKNNCVTYEIYQWYIVAE
HHHHHHCCCCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA