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The map label for this gene is 113475289

Identifier: 113475289

GI number: 113475289

Start: 2446514

End: 2447074

Strand: Reverse

Name: 113475289

Synonym: Tery_1598

Alternate gene names: NA

Gene position: 2447074-2446514 (Counterclockwise)

Preceding gene: 113475295

Following gene: 113475286

Centisome position: 31.57

GC content: 35.12

Gene sequence:

>561_bases
ATGGGTCTATCAAAATGTCTATTATTTGTGGCTCTTGTGCCACCTGAAAATATTCAAAACCAAGTTACCGAAATTAAGGA
GTATTTTTCTCGGAATTATAATAGTAGTCATGCTTTAAAATCTGTGCCTCATATTACTTTACAACCTCCTTTTAAATGGC
CGACTGAAAATTTAACTCTTTTGCAGGAGTCTTTAGAGGCTTTTACTCAACATTGCTCTGCTTTTCCCATTACTTTATCT
GGGTTTGCTGCTTTTGTGCCTCGTGTTATCTATATTAATGTTGTCAAGACTCCAGAACTATTAAAAATTCAACGGGACTT
AATTGCATTTACAGAAACTACTTTAGGAATTGTACATCCCCCTTCTAAAATTCGCCCTTTTTCTCCTCATGTTACTGTAG
CTTTTCGAGATTTAACTAAACAGAATTTTCGAGCGGCTTGGATAGAGTTTCGGGAGCGATCGCTAGATTTGGATTTTACA
GCTTCTCAGTTAACTTTATTAATTCATAATGGTAAGCGGTGGAATATTTGTAATGAGTTTCCTTTTCTCAGTACAAATTA
A

Upstream 100 bases:

>100_bases
ACATAGGCTATGTGGCCTGGTACATATTTATCAAATATGGCTTTTTCGACTATACCTTTTTCTATTTTGGCAAACCAAGG
CATTTTTATTAAGGAATTTT

Downstream 100 bases:

>100_bases
GATAATTCACTAATTATAATTACACAACGAATGGCAGATATATATCTGTGTATACAGATAAAATTTTGGTCAAAAAAAAT
AGTTTTTTAAACTATGTTTA

Product: 2',5' RNA ligase

Products: NA

Alternate protein names: 2 5' RNA Ligase; 2 5' RNA Ligase Family Protein; 2-5' RNA Ligase

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MGLSKCLLFVALVPPENIQNQVTEIKEYFSRNYNSSHALKSVPHITLQPPFKWPTENLTLLQESLEAFTQHCSAFPITLS
GFAAFVPRVIYINVVKTPELLKIQRDLIAFTETTLGIVHPPSKIRPFSPHVTVAFRDLTKQNFRAAWIEFRERSLDLDFT
ASQLTLLIHNGKRWNICNEFPFLSTN

Sequences:

>Translated_186_residues
MGLSKCLLFVALVPPENIQNQVTEIKEYFSRNYNSSHALKSVPHITLQPPFKWPTENLTLLQESLEAFTQHCSAFPITLS
GFAAFVPRVIYINVVKTPELLKIQRDLIAFTETTLGIVHPPSKIRPFSPHVTVAFRDLTKQNFRAAWIEFRERSLDLDFT
ASQLTLLIHNGKRWNICNEFPFLSTN
>Mature_185_residues
GLSKCLLFVALVPPENIQNQVTEIKEYFSRNYNSSHALKSVPHITLQPPFKWPTENLTLLQESLEAFTQHCSAFPITLSG
FAAFVPRVIYINVVKTPELLKIQRDLIAFTETTLGIVHPPSKIRPFSPHVTVAFRDLTKQNFRAAWIEFRERSLDLDFTA
SQLTLLIHNGKRWNICNEFPFLSTN

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21327; Mature: 21196

Theoretical pI: Translated: 8.87; Mature: 8.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSKCLLFVALVPPENIQNQVTEIKEYFSRNYNSSHALKSVPHITLQPPFKWPTENLTL
CCHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCCCCCHHHH
LQESLEAFTQHCSAFPITLSGFAAFVPRVIYINVVKTPELLKIQRDLIAFTETTLGIVHP
HHHHHHHHHHHHCCCCEEHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECC
PSKIRPFSPHVTVAFRDLTKQNFRAAWIEFRERSLDLDFTASQLTLLIHNGKRWNICNEF
CHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEECCCCCC
PFLSTN
CCCCCC
>Mature Secondary Structure 
GLSKCLLFVALVPPENIQNQVTEIKEYFSRNYNSSHALKSVPHITLQPPFKWPTENLTL
CHHHEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCCCCCHHHH
LQESLEAFTQHCSAFPITLSGFAAFVPRVIYINVVKTPELLKIQRDLIAFTETTLGIVHP
HHHHHHHHHHHHCCCCEEHHHHHHHHCEEEEEEEECCCHHHHHHHHHHHHHHHHEEEECC
PSKIRPFSPHVTVAFRDLTKQNFRAAWIEFRERSLDLDFTASQLTLLIHNGKRWNICNEF
CHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCEECCCCCC
PFLSTN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA