Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 113475295

GI number: 113475295

Start: 2451467

End: 2452744

Strand: Reverse

Name: ycjN [C]

Synonym: Tery_1604

Alternate gene names: 113475295

Gene position: 2452744-2451467 (Counterclockwise)

Preceding gene: 113475299

Following gene: 113475289

Centisome position: 31.65

GC content: 33.72

Gene sequence:

>1278_bases
ATGTTTCTCATAGTTAAATGGAAAAGGTTTAAAATATTTACTATTCTGGGGCTAATTATAACAATTTTTATTGGTTGCAC
TTCTCCCTATCCTATTTTAAAGACTAAAGAAATTGAATTTTGGACAATACAGCTTCAACCTCAGTTTACTAATTATTTTA
ATCAGTTAATTGCTGATTTTGAAGCAGATAATCCAGATTTATCAGTGCGATGGGTTGATTTACCTTGGTCGGAGATAGAA
AGCAAAATTGAGAGTGCTATTGTCACAGAAACTCTTCCAGACATTGTGAATCTTAACTCAAGTTTCACACATTTATTAAC
TCGACCTAATGCCTGGCTAAATTTAGATACTATTTTATCAGATTCGGTGAGGAATGAATATTTACCTAATCTTTGGCAAT
GTAGTCAGATTAATGGTAAAAGTCTTGGTATCCCATGGTATGGTACGATGAATATAACAATTTATAATTCAGAGCTATTT
AAAGAGGCAGAACTCGAAGAACCTCCAACAAATTATACTGAATTAGCTAAGGTCGCTAGACAAATTAAAGAAAAAACTGA
TAAATATGCATTCTTTGTTTCTTTTTCGCCACAAGGAGGAAATGAGGTATTAGAGTCTTTTGGCAAGATGGGAGTTGAGT
TAATAAATGTTGATGGAAAAGCTGCTTTTAATACTCCACTCGGTGAGGCAGTATTTAAGTATTGGGTTGATCTATATAGA
GAAGATTTATTACCAGAGGAAGTATTGACCGAAGGAATTCAAGCAGGTGAAGATTTGTATCAAGCTGGAGAAACTGCTAT
GGTATTTTCTGGACCAGAGTTTATTACAGCCATATCTGAAAATATACCTGAAATTGGAAAGGTATCATTCCCAACATCTC
AAGTTACAGGTAAGACTGATAAGAAGGGTATAGTTTTGATGAATTTTGCTATTTCTAGCAAAACTAAATTACCAGATGGA
GCCCTGAAGTTTGTTTTGTTTATTACTAATTATCAAAATCAAATGGCTTTTGCTCAGGAGACTAATGTTTTACCCTCTAC
AACTAAGACCTTAAAAAATAGTTATTTTCAAAATATTTCTTCTGATGCTTCTACTCAAGATCGGGGTCGAGTTATTAGTG
CTAATCAAATTTTGGCAGCAGAAGTTTTACTGCCACCTATTAAAAATTTGGATAAGTTGAAACAAATTATTTATCAAAGT
TTACAGGAGGCTATGTTGGCAGAAAAAACTATTGAGCAAGCGATCGCTGATGCCGCATCTGAATGGGATAAGCTTTGA

Upstream 100 bases:

>100_bases
TGGATTCAAAATTATATTTGCTATAAATTAAAAGTTATTTTTATTTGAATAATTAGTTTTATAGCAATCACAAATAAGGT
ATTTTTCTAGGTTTTATCGA

Downstream 100 bases:

>100_bases
TTATTTCGTAGCTTATGTAGAAAAAAGTGAAACCCAACAAAGATTTTATTTAGGGTTTACTGAAAAAGTATTTTTAGGGA
AGAAAGAGGCAGTCGAGAGT

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 425

Protein sequence:

>425_residues
MFLIVKWKRFKIFTILGLIITIFIGCTSPYPILKTKEIEFWTIQLQPQFTNYFNQLIADFEADNPDLSVRWVDLPWSEIE
SKIESAIVTETLPDIVNLNSSFTHLLTRPNAWLNLDTILSDSVRNEYLPNLWQCSQINGKSLGIPWYGTMNITIYNSELF
KEAELEEPPTNYTELAKVARQIKEKTDKYAFFVSFSPQGGNEVLESFGKMGVELINVDGKAAFNTPLGEAVFKYWVDLYR
EDLLPEEVLTEGIQAGEDLYQAGETAMVFSGPEFITAISENIPEIGKVSFPTSQVTGKTDKKGIVLMNFAISSKTKLPDG
ALKFVLFITNYQNQMAFAQETNVLPSTTKTLKNSYFQNISSDASTQDRGRVISANQILAAEVLLPPIKNLDKLKQIIYQS
LQEAMLAEKTIEQAIADAASEWDKL

Sequences:

>Translated_425_residues
MFLIVKWKRFKIFTILGLIITIFIGCTSPYPILKTKEIEFWTIQLQPQFTNYFNQLIADFEADNPDLSVRWVDLPWSEIE
SKIESAIVTETLPDIVNLNSSFTHLLTRPNAWLNLDTILSDSVRNEYLPNLWQCSQINGKSLGIPWYGTMNITIYNSELF
KEAELEEPPTNYTELAKVARQIKEKTDKYAFFVSFSPQGGNEVLESFGKMGVELINVDGKAAFNTPLGEAVFKYWVDLYR
EDLLPEEVLTEGIQAGEDLYQAGETAMVFSGPEFITAISENIPEIGKVSFPTSQVTGKTDKKGIVLMNFAISSKTKLPDG
ALKFVLFITNYQNQMAFAQETNVLPSTTKTLKNSYFQNISSDASTQDRGRVISANQILAAEVLLPPIKNLDKLKQIIYQS
LQEAMLAEKTIEQAIADAASEWDKL
>Mature_425_residues
MFLIVKWKRFKIFTILGLIITIFIGCTSPYPILKTKEIEFWTIQLQPQFTNYFNQLIADFEADNPDLSVRWVDLPWSEIE
SKIESAIVTETLPDIVNLNSSFTHLLTRPNAWLNLDTILSDSVRNEYLPNLWQCSQINGKSLGIPWYGTMNITIYNSELF
KEAELEEPPTNYTELAKVARQIKEKTDKYAFFVSFSPQGGNEVLESFGKMGVELINVDGKAAFNTPLGEAVFKYWVDLYR
EDLLPEEVLTEGIQAGEDLYQAGETAMVFSGPEFITAISENIPEIGKVSFPTSQVTGKTDKKGIVLMNFAISSKTKLPDG
ALKFVLFITNYQNQMAFAQETNVLPSTTKTLKNSYFQNISSDASTQDRGRVISANQILAAEVLLPPIKNLDKLKQIIYQS
LQEAMLAEKTIEQAIADAASEWDKL

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47944; Mature: 47944

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIVKWKRFKIFTILGLIITIFIGCTSPYPILKTKEIEFWTIQLQPQFTNYFNQLIADF
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECHHHHHHHHHHHHHC
EADNPDLSVRWVDLPWSEIESKIESAIVTETLPDIVNLNSSFTHLLTRPNAWLNLDTILS
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEHHHHHH
DSVRNEYLPNLWQCSQINGKSLGIPWYGTMNITIYNSELFKEAELEEPPTNYTELAKVAR
HHHHHHHCCCCEECCCCCCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHH
QIKEKTDKYAFFVSFSPQGGNEVLESFGKMGVELINVDGKAAFNTPLGEAVFKYWVDLYR
HHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EDLLPEEVLTEGIQAGEDLYQAGETAMVFSGPEFITAISENIPEIGKVSFPTSQVTGKTD
HHCCHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KKGIVLMNFAISSKTKLPDGALKFVLFITNYQNQMAFAQETNVLPSTTKTLKNSYFQNIS
CCCEEEEEEEECCCCCCCCHHEEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHCC
SDASTQDRGRVISANQILAAEVLLPPIKNLDKLKQIIYQSLQEAMLAEKTIEQAIADAAS
CCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWDKL
HHCCC
>Mature Secondary Structure
MFLIVKWKRFKIFTILGLIITIFIGCTSPYPILKTKEIEFWTIQLQPQFTNYFNQLIADF
CEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEEEECHHHHHHHHHHHHHC
EADNPDLSVRWVDLPWSEIESKIESAIVTETLPDIVNLNSSFTHLLTRPNAWLNLDTILS
CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCEEHHHHHH
DSVRNEYLPNLWQCSQINGKSLGIPWYGTMNITIYNSELFKEAELEEPPTNYTELAKVAR
HHHHHHHCCCCEECCCCCCCCCCCCEEEEEEEEEECHHHHHHCCCCCCCCCHHHHHHHHH
QIKEKTDKYAFFVSFSPQGGNEVLESFGKMGVELINVDGKAAFNTPLGEAVFKYWVDLYR
HHHHCCCCEEEEEEECCCCCHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHH
EDLLPEEVLTEGIQAGEDLYQAGETAMVFSGPEFITAISENIPEIGKVSFPTSQVTGKTD
HHCCHHHHHHHHHHCCHHHHHCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
KKGIVLMNFAISSKTKLPDGALKFVLFITNYQNQMAFAQETNVLPSTTKTLKNSYFQNIS
CCCEEEEEEEECCCCCCCCHHEEEEEEEECCCCHHHHHHHCCCCCCHHHHHHHHHHHHCC
SDASTQDRGRVISANQILAAEVLLPPIKNLDKLKQIIYQSLQEAMLAEKTIEQAIADAAS
CCCCCCCCCEEEECCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EWDKL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA