| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475261
Identifier: 113475261
GI number: 113475261
Start: 2397804
End: 2398958
Strand: Reverse
Name: 113475261
Synonym: Tery_1569
Alternate gene names: NA
Gene position: 2398958-2397804 (Counterclockwise)
Preceding gene: 113475262
Following gene: 113475259
Centisome position: 30.95
GC content: 42.77
Gene sequence:
>1155_bases ATGAAAATTTACGACAAAATATCTGACTGGTTAGAAATTAATTGGGTTAAACCCGCCTATGGGGGTGGGTTACTCGGAGT ATTGTCAATTTTCTTCTTTGCTGCTGCTGCTAATACTATGGCAGGATGGTTATACTTAATTAGTGCCATTACTTTCGCAC TGTTGGGAGTAAGTGCTCTTTTGCCTGGGCGATCGCTACGTGAAATAAAAGTACGTCGTGATCGAATTCAACCTATAACT GTGGGTGATAGTTTAGCGATCGCTTTAACAATAGAAAATACTACTAACAAACCACTGGCTTTGCTACAAGTCCAAGATGA AATTCCTTTTGTATTAGGGAAACCAGTGCAACAAGCAATAGAGGTTATTCCCCCTAAAGAAAGTTACCATTGGGTTTACT ACCTTCCTACTAAAAAAAGGGGTATATATAGATGGCATTATCTTCAGCTTAGAACTGCAGCACCTCTAGGTCTCTTCTGG TGTCGGCGTAGTCGAAATGCTAAAGCTACTGCTATTGTCTATCCCACGGTTTTACCTTTGAGTCGTTGCCCGATCTTGGA TGAGCTTGGTGAAGAATATAGTCGCCAACTTCATGAACATAGTCGTTTTGAAATGGCTTCCCAGGGACTAACTCGGACAT TAAGACCGTATCGGTTTGGAGACTCTAGTCGTTTGATCCACTGGCGGAGTAGTGCACGTTATGGGGAGTTGCGGGTTCGA GAGCTAGAGGTATCTAAGGCTGGTGAAGAAGTTCTAATTTGTCTTGATAGTGCTGCTGAGTGGCAACCTGATAATTTTGA GGCTGCGGTGACTGCTGCTGCTTCTTTATATTTTTATGCTAACCGCTCTTTGTTAAATGTTCGACTTTGGACAGCTGCTA CTGGGTTGGTTTATGGTAATTTGGCTATGTTGCAAACTTTGGCTGGGGTTAGGTTTGGGGAAGAGGTGGTGGTGGGAAAC CCACCGGAAAAGCCTTTGGTTTGGTTGACTCAAAATTCTCTGAGTCTGAGTTCTCTTCCTCCTGGGAGTAGATGGTTGTT GTGGTTAGATGAGTCTGTTGGTTATGCAGCAGAAACACCAAGGATGCAATATTGTTCTGGTTTGAATATTAGTTCTGATC AACCTTTGGAGTTTCAACTTCAGTCTAGTGTTTGA
Upstream 100 bases:
>100_bases GAAACCGGGTTTATTGCTTTGATTATTGTTTTTGACTTTTCTTGAAATGTCTAACTATTAGGCTTCTCGGTTAGTGCTAA TAAATAAAATAATTTACTAA
Downstream 100 bases:
>100_bases GGGAGTCAGGAAAATTGACTTAGTTGAGAATTTACCTGATAAAGCGATATCATGAGTTAGTTGTATCAAATAATAATGTG GTGAAATTTGTCAAACCTAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 384; Mature: 384
Protein sequence:
>384_residues MKIYDKISDWLEINWVKPAYGGGLLGVLSIFFFAAAANTMAGWLYLISAITFALLGVSALLPGRSLREIKVRRDRIQPIT VGDSLAIALTIENTTNKPLALLQVQDEIPFVLGKPVQQAIEVIPPKESYHWVYYLPTKKRGIYRWHYLQLRTAAPLGLFW CRRSRNAKATAIVYPTVLPLSRCPILDELGEEYSRQLHEHSRFEMASQGLTRTLRPYRFGDSSRLIHWRSSARYGELRVR ELEVSKAGEEVLICLDSAAEWQPDNFEAAVTAAASLYFYANRSLLNVRLWTAATGLVYGNLAMLQTLAGVRFGEEVVVGN PPEKPLVWLTQNSLSLSSLPPGSRWLLWLDESVGYAAETPRMQYCSGLNISSDQPLEFQLQSSV
Sequences:
>Translated_384_residues MKIYDKISDWLEINWVKPAYGGGLLGVLSIFFFAAAANTMAGWLYLISAITFALLGVSALLPGRSLREIKVRRDRIQPIT VGDSLAIALTIENTTNKPLALLQVQDEIPFVLGKPVQQAIEVIPPKESYHWVYYLPTKKRGIYRWHYLQLRTAAPLGLFW CRRSRNAKATAIVYPTVLPLSRCPILDELGEEYSRQLHEHSRFEMASQGLTRTLRPYRFGDSSRLIHWRSSARYGELRVR ELEVSKAGEEVLICLDSAAEWQPDNFEAAVTAAASLYFYANRSLLNVRLWTAATGLVYGNLAMLQTLAGVRFGEEVVVGN PPEKPLVWLTQNSLSLSSLPPGSRWLLWLDESVGYAAETPRMQYCSGLNISSDQPLEFQLQSSV >Mature_384_residues MKIYDKISDWLEINWVKPAYGGGLLGVLSIFFFAAAANTMAGWLYLISAITFALLGVSALLPGRSLREIKVRRDRIQPIT VGDSLAIALTIENTTNKPLALLQVQDEIPFVLGKPVQQAIEVIPPKESYHWVYYLPTKKRGIYRWHYLQLRTAAPLGLFW CRRSRNAKATAIVYPTVLPLSRCPILDELGEEYSRQLHEHSRFEMASQGLTRTLRPYRFGDSSRLIHWRSSARYGELRVR ELEVSKAGEEVLICLDSAAEWQPDNFEAAVTAAASLYFYANRSLLNVRLWTAATGLVYGNLAMLQTLAGVRFGEEVVVGN PPEKPLVWLTQNSLSLSSLPPGSRWLLWLDESVGYAAETPRMQYCSGLNISSDQPLEFQLQSSV
Specific function: Unknown
COG id: COG1721
COG function: function code R; Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43210; Mature: 43210
Theoretical pI: Translated: 8.76; Mature: 8.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIYDKISDWLEINWVKPAYGGGLLGVLSIFFFAAAANTMAGWLYLISAITFALLGVSAL CCCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPGRSLREIKVRRDRIQPITVGDSLAIALTIENTTNKPLALLQVQDEIPFVLGKPVQQAI CCCCCHHHHHHHHHCCCEEEECCCEEEEEEEECCCCCCEEEEEECCCCCEEECCCHHHHH EVIPPKESYHWVYYLPTKKRGIYRWHYLQLRTAAPLGLFWCRRSRNAKATAIVYPTVLPL HHCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCC SRCPILDELGEEYSRQLHEHSRFEMASQGLTRTLRPYRFGDSSRLIHWRSSARYGELRVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCEEEE ELEVSKAGEEVLICLDSAAEWQPDNFEAAVTAAASLYFYANRSLLNVRLWTAATGLVYGN EEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHEEEEEEECCCEEEEEEEEEECHHHHHH LAMLQTLAGVRFGEEVVVGNPPEKPLVWLTQNSLSLSSLPPGSRWLLWLDESVGYAAETP HHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCEECCCCCCCEEEEEEECCCCCCCCCC RMQYCSGLNISSDQPLEFQLQSSV CHHHHCCCCCCCCCCEEEEECCCC >Mature Secondary Structure MKIYDKISDWLEINWVKPAYGGGLLGVLSIFFFAAAANTMAGWLYLISAITFALLGVSAL CCCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPGRSLREIKVRRDRIQPITVGDSLAIALTIENTTNKPLALLQVQDEIPFVLGKPVQQAI CCCCCHHHHHHHHHCCCEEEECCCEEEEEEEECCCCCCEEEEEECCCCCEEECCCHHHHH EVIPPKESYHWVYYLPTKKRGIYRWHYLQLRTAAPLGLFWCRRSRNAKATAIVYPTVLPL HHCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHCCCCCCEEEEEEECCCCC SRCPILDELGEEYSRQLHEHSRFEMASQGLTRTLRPYRFGDSSRLIHWRSSARYGELRVR CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCCCCCEEEE ELEVSKAGEEVLICLDSAAEWQPDNFEAAVTAAASLYFYANRSLLNVRLWTAATGLVYGN EEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHEEEEEEECCCEEEEEEEEEECHHHHHH LAMLQTLAGVRFGEEVVVGNPPEKPLVWLTQNSLSLSSLPPGSRWLLWLDESVGYAAETP HHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCCEECCCCCCCEEEEEEECCCCCCCCCC RMQYCSGLNISSDQPLEFQLQSSV CHHHHCCCCCCCCCCEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA