| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475251
Identifier: 113475251
GI number: 113475251
Start: 2379271
End: 2381265
Strand: Direct
Name: 113475251
Synonym: Tery_1559
Alternate gene names: NA
Gene position: 2379271-2381265 (Clockwise)
Preceding gene: 113475250
Following gene: 113475253
Centisome position: 30.7
GC content: 34.19
Gene sequence:
>1995_bases ATGGAAGCTGATATAACACTAGATCAGGCAACTTTACCATGGTATTTAGGAATTGATTTTGGTACTACTAGTATTTCCGC AGCGTTATTTAATAGGAAAAGTGGGGAAGTTTATCCTATTTATTGGGAGCTTGTAGATGTTAAACCAGAATTGAATATTC CTGAAATTAATCTAGAATTTACTGTCTCTACAAAAAAAGTTAAAACTGATTTTAGCTCGACTCAAAAAATATATAGGCTA CCATCAATTGTTTATATAGCTCAACATCTGGAAATATCTGACAATGATCGAGAGGGAAATATAGAACAAAAATGTTTATT GTTACAAAGTTTTAAGCAGAGTTTAAAAGCTACTATTCCTTACGTTGTAGTTCAATTTAAAAAACAAAAATTACAGAATA AACTAGAAGAACCTTTTCAAATTTCTCCTAATTTTTATGCTTCAACTGCTCATGAACCTGTTTTACAGTGGTCTGAAAAA CACCAAGTTCCTCTTAGTTTAGTTAAGCAAGGGTTAGTAACTTTATTAGCTACCCTTCAACCTCAAGGTAATATCCAAAG TTCTATTTCTCTAATTGAGAAGGATACTCAAACAATAGTTATGACTAATGATTATGTTTGTGGTGCAGTGGGATTGAATT ATGAAGCTTTTGTCTCAGCTTTAGCACAATTAAGGTCTGTAGTTATGGGTTATCCGGCAAGTTGGCCAGAAGCTTATCGC TTTAATCTTCGGGAAGCAGTTTTAGAAGCAGGTTTGGTGAAAAATGTTACTCAGATAGTTTTGATTGAGGATGCGATCGC TACAGGTTTATCAGAGTTCATTTCAGCAGAAAAAGATACGAACAATTTCACTACCTCAGGATACAGAAGGGGTGTAATTT TAATTGTGAATGTGGGGGCAACTACGACAGAATTCACTTTGATGAGTTTACCAGAAAGTGGGCAAAATTTAACCTACTCT AATTTTCATTGTCATAGTTTTGCTTATGGGGGTCATGCTTTAGACCAAGATATTATTTGTCAATTGTTATTACAAGATGA CAATGTGGAGAGTTTAGGGAAGAGTCAAGAAAAATCTGGTCGGTTATGGCCACGTCCAGGTTATCCAGATTTGTCAATTA GGTATCAACTACGGCAGTGGTTACAAACTTCGCCTTATAGGCAAGAATTATTAGTAACAGCTCATAATTTAAAGTTAATT CTGCCATGGGAAAAAGAGTTCACTGTAAATATAGGCGATCGCATAAAGTACTTACAAGAAACAGACTTGGAAAATAAGGT ATTGGAACCTTTTGTTAAGCAATTAAATCAAGAGTTAAATAGTTTTTTAATTAAGGTGGGAATATCTCCTGTGGGAATTA ACCGGGCTGTTTGTACTGGAGGTGGTGGTTGTTGGGCGACGGTTGCTCGTTGGTTACGTCAAAAATTGCCTAACGCAATT ATTGTACAAGATGTAAAAGCTGAGTCTAAAAATTTAGATTTAGGGCAAAAAAATCACCAGGGGGGGAATAATTATTTATC TCAGGCAGAAAATATTAAGTTAGCTATTGGTCGAGTTGCTTATGGTTTAGCTATCTTACCTCTCTATCCACAACTTCTAG ATATACCTGAGCAACAATACAATGATTATTTTCTACTTTGGGAGATATTGGAAGTTTTCTCATATTATCCTTTATCTATG AAAGAAGTTTTTCAGTTATTAGAAAAACGCGGCATAAATACTCGTGTTTGCCAAGAAAAAGTTCAGGCTATTTTAGATGG GAAATTACCTCCTGGTTTAATCCCTTCTGAGGAAGATTTAATGCTATTAAGTGAAGTTTCTCGACAAAATTTTTACTATC AAAGTTTAAAGGCAAATCCTCTTTTTGATCAAAAAATTGATAGTAGTAAATATGAGTTAAATTATGAACAAGCTGAATAT GTAAGAGAATACTTAAATAAGATAGTAACCAGCAATAAGCAAAAGTTTAAGGAACCTTTTCTCAGGGGGCTTTAG
Upstream 100 bases:
>100_bases ATGAAAAAATAACGGAAACAGATAATCAGGAATTTTCTCCTCTAGAAACTTTACTTCAAGAGAAAAAAAATTCAGAAAAA AAAATTTGAGTTCATTAGAA
Downstream 100 bases:
>100_bases TGAAACTTATTTTTTAAATTTAAATATAGCCTCAACCCACTCTATGAGAGGTTAATAGGATTATATTTAATGTTAACCAA CTCAAAAAATAGTAAAGACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 664; Mature: 664
Protein sequence:
>664_residues MEADITLDQATLPWYLGIDFGTTSISAALFNRKSGEVYPIYWELVDVKPELNIPEINLEFTVSTKKVKTDFSSTQKIYRL PSIVYIAQHLEISDNDREGNIEQKCLLLQSFKQSLKATIPYVVVQFKKQKLQNKLEEPFQISPNFYASTAHEPVLQWSEK HQVPLSLVKQGLVTLLATLQPQGNIQSSISLIEKDTQTIVMTNDYVCGAVGLNYEAFVSALAQLRSVVMGYPASWPEAYR FNLREAVLEAGLVKNVTQIVLIEDAIATGLSEFISAEKDTNNFTTSGYRRGVILIVNVGATTTEFTLMSLPESGQNLTYS NFHCHSFAYGGHALDQDIICQLLLQDDNVESLGKSQEKSGRLWPRPGYPDLSIRYQLRQWLQTSPYRQELLVTAHNLKLI LPWEKEFTVNIGDRIKYLQETDLENKVLEPFVKQLNQELNSFLIKVGISPVGINRAVCTGGGGCWATVARWLRQKLPNAI IVQDVKAESKNLDLGQKNHQGGNNYLSQAENIKLAIGRVAYGLAILPLYPQLLDIPEQQYNDYFLLWEILEVFSYYPLSM KEVFQLLEKRGINTRVCQEKVQAILDGKLPPGLIPSEEDLMLLSEVSRQNFYYQSLKANPLFDQKIDSSKYELNYEQAEY VREYLNKIVTSNKQKFKEPFLRGL
Sequences:
>Translated_664_residues MEADITLDQATLPWYLGIDFGTTSISAALFNRKSGEVYPIYWELVDVKPELNIPEINLEFTVSTKKVKTDFSSTQKIYRL PSIVYIAQHLEISDNDREGNIEQKCLLLQSFKQSLKATIPYVVVQFKKQKLQNKLEEPFQISPNFYASTAHEPVLQWSEK HQVPLSLVKQGLVTLLATLQPQGNIQSSISLIEKDTQTIVMTNDYVCGAVGLNYEAFVSALAQLRSVVMGYPASWPEAYR FNLREAVLEAGLVKNVTQIVLIEDAIATGLSEFISAEKDTNNFTTSGYRRGVILIVNVGATTTEFTLMSLPESGQNLTYS NFHCHSFAYGGHALDQDIICQLLLQDDNVESLGKSQEKSGRLWPRPGYPDLSIRYQLRQWLQTSPYRQELLVTAHNLKLI LPWEKEFTVNIGDRIKYLQETDLENKVLEPFVKQLNQELNSFLIKVGISPVGINRAVCTGGGGCWATVARWLRQKLPNAI IVQDVKAESKNLDLGQKNHQGGNNYLSQAENIKLAIGRVAYGLAILPLYPQLLDIPEQQYNDYFLLWEILEVFSYYPLSM KEVFQLLEKRGINTRVCQEKVQAILDGKLPPGLIPSEEDLMLLSEVSRQNFYYQSLKANPLFDQKIDSSKYELNYEQAEY VREYLNKIVTSNKQKFKEPFLRGL >Mature_664_residues MEADITLDQATLPWYLGIDFGTTSISAALFNRKSGEVYPIYWELVDVKPELNIPEINLEFTVSTKKVKTDFSSTQKIYRL PSIVYIAQHLEISDNDREGNIEQKCLLLQSFKQSLKATIPYVVVQFKKQKLQNKLEEPFQISPNFYASTAHEPVLQWSEK HQVPLSLVKQGLVTLLATLQPQGNIQSSISLIEKDTQTIVMTNDYVCGAVGLNYEAFVSALAQLRSVVMGYPASWPEAYR FNLREAVLEAGLVKNVTQIVLIEDAIATGLSEFISAEKDTNNFTTSGYRRGVILIVNVGATTTEFTLMSLPESGQNLTYS NFHCHSFAYGGHALDQDIICQLLLQDDNVESLGKSQEKSGRLWPRPGYPDLSIRYQLRQWLQTSPYRQELLVTAHNLKLI LPWEKEFTVNIGDRIKYLQETDLENKVLEPFVKQLNQELNSFLIKVGISPVGINRAVCTGGGGCWATVARWLRQKLPNAI IVQDVKAESKNLDLGQKNHQGGNNYLSQAENIKLAIGRVAYGLAILPLYPQLLDIPEQQYNDYFLLWEILEVFSYYPLSM KEVFQLLEKRGINTRVCQEKVQAILDGKLPPGLIPSEEDLMLLSEVSRQNFYYQSLKANPLFDQKIDSSKYELNYEQAEY VREYLNKIVTSNKQKFKEPFLRGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 75458; Mature: 75458
Theoretical pI: Translated: 5.61; Mature: 5.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEADITLDQATLPWYLGIDFGTTSISAALFNRKSGEVYPIYWELVDVKPELNIPEINLEF CCCCEEECCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEE TVSTKKVKTDFSSTQKIYRLPSIVYIAQHLEISDNDREGNIEQKCLLLQSFKQSLKATIP EEEHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YVVVQFKKQKLQNKLEEPFQISPNFYASTAHEPVLQWSEKHQVPLSLVKQGLVTLLATLQ HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCC PQGNIQSSISLIEKDTQTIVMTNDYVCGAVGLNYEAFVSALAQLRSVVMGYPASWPEAYR CCCCHHHHHHHHHCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHH FNLREAVLEAGLVKNVTQIVLIEDAIATGLSEFISAEKDTNNFTTSGYRRGVILIVNVGA HHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC TTTEFTLMSLPESGQNLTYSNFHCHSFAYGGHALDQDIICQLLLQDDNVESLGKSQEKSG CCEEEEEEECCCCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHCCCCHHHHCCCHHHCC RLWPRPGYPDLSIRYQLRQWLQTSPYRQELLVTAHNLKLILPWEKEFTVNIGDRIKYLQE CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEEEECEEEEEECCCCEEEEHHHHHHHHHH TDLENKVLEPFVKQLNQELNSFLIKVGISPVGINRAVCTGGGGCWATVARWLRQKLPNAI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEE IVQDVKAESKNLDLGQKNHQGGNNYLSQAENIKLAIGRVAYGLAILPLYPQLLDIPEQQY EEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHCHHHHCCCHHHC NDYFLLWEILEVFSYYPLSMKEVFQLLEKRGINTRVCQEKVQAILDGKLPPGLIPSEEDL CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH MLLSEVSRQNFYYQSLKANPLFDQKIDSSKYELNYEQAEYVREYLNKIVTSNKQKFKEPF HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHH LRGL HCCC >Mature Secondary Structure MEADITLDQATLPWYLGIDFGTTSISAALFNRKSGEVYPIYWELVDVKPELNIPEINLEF CCCCEEECCCCCCEEEEEECCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCEEEEEE TVSTKKVKTDFSSTQKIYRLPSIVYIAQHLEISDNDREGNIEQKCLLLQSFKQSLKATIP EEEHHHHHCCHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH YVVVQFKKQKLQNKLEEPFQISPNFYASTAHEPVLQWSEKHQVPLSLVKQGLVTLLATLQ HHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCC PQGNIQSSISLIEKDTQTIVMTNDYVCGAVGLNYEAFVSALAQLRSVVMGYPASWPEAYR CCCCHHHHHHHHHCCCCEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCHHHH FNLREAVLEAGLVKNVTQIVLIEDAIATGLSEFISAEKDTNNFTTSGYRRGVILIVNVGA HHHHHHHHHHHHHHCCHHEEEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCC TTTEFTLMSLPESGQNLTYSNFHCHSFAYGGHALDQDIICQLLLQDDNVESLGKSQEKSG CCEEEEEEECCCCCCCCEECCEEEEEEECCCCCCCHHHHHHHHHCCCCHHHHCCCHHHCC RLWPRPGYPDLSIRYQLRQWLQTSPYRQELLVTAHNLKLILPWEKEFTVNIGDRIKYLQE CCCCCCCCCCCHHHHHHHHHHHCCCCHHHHEEEEECEEEEEECCCCEEEEHHHHHHHHHH TDLENKVLEPFVKQLNQELNSFLIKVGISPVGINRAVCTGGGGCWATVARWLRQKLPNAI CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCEE IVQDVKAESKNLDLGQKNHQGGNNYLSQAENIKLAIGRVAYGLAILPLYPQLLDIPEQQY EEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEHHHHHHHHHHHHHCHHHHCCCHHHC NDYFLLWEILEVFSYYPLSMKEVFQLLEKRGINTRVCQEKVQAILDGKLPPGLIPSEEDL CCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHH MLLSEVSRQNFYYQSLKANPLFDQKIDSSKYELNYEQAEYVREYLNKIVTSNKQKFKEPF HHHHHHHHCCHHHHHCCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHH LRGL HCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA