| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475241
Identifier: 113475241
GI number: 113475241
Start: 2361896
End: 2362381
Strand: Direct
Name: 113475241
Synonym: Tery_1549
Alternate gene names: NA
Gene position: 2361896-2362381 (Clockwise)
Preceding gene: 113475240
Following gene: 113475246
Centisome position: 30.48
GC content: 35.19
Gene sequence:
>486_bases ATGAAAAAAACCATCATCGGTGTCATGGGTCCTGGCAATAGCGCCACTTCAACAGACCTAAAAAATGCCTATAAACTAGG TCAATTAATTGCTCAAGAATCTTGGGTATTATTGACAGGAGGGCGAAATATTGGAGTAATGGATGCTGCGAGTCGGGGAG CGAAATTTCTTAATGGTTTAACTATTGGAATTTTACCCGACAATAATCTTCATAGTATTTCTGAGGCTGTAGATATTCCC ATTATTACTGATATGGGAAATAGTCGTAATAATATTAATGTACTTTCTAGTGACGTTGTTATTGCCTGCGGAATGGGAGT AGGAACTGCTTCCGAAATTGCTTTAGCAATTAAGAATAATAAAAAAGTAATTTTGTTGAATAATAACTTAGAAAGTCAGG CTTTTTTTGTTGCCTTATCTCCTCAAACAGTTTTTGTTGTAAACACTCCAGAAGCCGTTATTGAAGTAGTTAAAAATTTG ATTTGA
Upstream 100 bases:
>100_bases AAATTATGTATTGTAGGTATCTTCCCCAGGTAGTTTTAACTCATAAAAAAAGAAAGCACCGTAAGTTATTTCAGCTATAA AATAAAAAAAAATACCAAAA
Downstream 100 bases:
>100_bases GTAGTATTCTATCAATCTTTTCCTAAATGCAGATCGCAATTGAAACTACTGTAAGCGCAAACCATTAAAGCAAAATAACC GCTTACGGCGCTTTTCAAAT
Product: P450 cytochrome
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 161
Protein sequence:
>161_residues MKKTIIGVMGPGNSATSTDLKNAYKLGQLIAQESWVLLTGGRNIGVMDAASRGAKFLNGLTIGILPDNNLHSISEAVDIP IITDMGNSRNNINVLSSDVVIACGMGVGTASEIALAIKNNKKVILLNNNLESQAFFVALSPQTVFVVNTPEAVIEVVKNL I
Sequences:
>Translated_161_residues MKKTIIGVMGPGNSATSTDLKNAYKLGQLIAQESWVLLTGGRNIGVMDAASRGAKFLNGLTIGILPDNNLHSISEAVDIP IITDMGNSRNNINVLSSDVVIACGMGVGTASEIALAIKNNKKVILLNNNLESQAFFVALSPQTVFVVNTPEAVIEVVKNL I >Mature_161_residues MKKTIIGVMGPGNSATSTDLKNAYKLGQLIAQESWVLLTGGRNIGVMDAASRGAKFLNGLTIGILPDNNLHSISEAVDIP IITDMGNSRNNINVLSSDVVIACGMGVGTASEIALAIKNNKKVILLNNNLESQAFFVALSPQTVFVVNTPEAVIEVVKNL I
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005268 - InterPro: IPR005269 [H]
Pfam domain/function: PF03641 Lysine_decarbox [H]
EC number: NA
Molecular weight: Translated: 16947; Mature: 16947
Theoretical pI: Translated: 7.36; Mature: 7.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKTIIGVMGPGNSATSTDLKNAYKLGQLIAQESWVLLTGGRNIGVMDAASRGAKFLNGL CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHCCC TIGILPDNNLHSISEAVDIPIITDMGNSRNNINVLSSDVVIACGMGVGTASEIALAIKNN EEEEECCCCCHHHHHHCCCEEEECCCCCCCCEEEEECCEEEEECCCCCCHHHEEEEEECC KKVILLNNNLESQAFFVALSPQTVFVVNTPEAVIEVVKNLI CEEEEEECCCCCEEEEEEECCCEEEEEECCHHHHHHHHHCC >Mature Secondary Structure MKKTIIGVMGPGNSATSTDLKNAYKLGQLIAQESWVLLTGGRNIGVMDAASRGAKFLNGL CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCCHHHCCC TIGILPDNNLHSISEAVDIPIITDMGNSRNNINVLSSDVVIACGMGVGTASEIALAIKNN EEEEECCCCCHHHHHHCCCEEEECCCCCCCCEEEEECCEEEEECCCCCCHHHEEEEEECC KKVILLNNNLESQAFFVALSPQTVFVVNTPEAVIEVVKNLI CEEEEEECCCCCEEEEEEECCCEEEEEECCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]