| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475240
Identifier: 113475240
GI number: 113475240
Start: 2360072
End: 2361457
Strand: Direct
Name: 113475240
Synonym: Tery_1548
Alternate gene names: NA
Gene position: 2360072-2361457 (Clockwise)
Preceding gene: 113475239
Following gene: 113475241
Centisome position: 30.45
GC content: 33.62
Gene sequence:
>1386_bases ATGAAAAACTTGACAATTAGCTTATTAGCATTTCATCTATATTCTCCATTCCTAGAATCTTCAGAAACAAACGACCAGGA AGGCAAATTATTATGGGAAAACCTCACCCAACTCGGAGAAAAATCTCTACCATTTTTAGGACTCAAATATTTACCCCATC AATTAATTTGCTACGACCAAAATGGCAACTACAACCTAGATTTTAAAACTCATGAAAATAACTGGTGGATGAGCAGATCA AAGCAAACAATAGACCTAGGTGTAATTGAAATAGAAGAATGCAAAATAGCAGGTAATCTCCAGCCATTTATCCTCAACGA CACCTACGCCGCCGACCTAACTCTCACACCTAAATTATCAGAAGAAAAACTAGATATTTCTCAACTAAAAAAATTCCCCA TAAACAACCTATTACCCTCATCAATTCAAGCATCACTAGGAGAAACATTTTTAATTTATGGAGAAATAGACTCAGAAGTA AATCCCCAACAAATAGCCGATGAATGTGTAGAAAACTTATTCAATTCCGCCCAAATTGAACCTGTATTTCTCAGCCAAAG CAAATTATTTAATAGCTTACTATTTGAATACCAAGGAACAGAATTAAACCAAAATAATAACCAAAGTCAACCATTCAAAA TATTAGTCTTATTAAAAAATAGTCAAGCAGAAACATTAAAACTAGCAGAAAAATCCTATGAATGGATATTACAATTATTA TGTTGTCGCCATAAAATCAATTTTATCTATCAAGAATCACGAAATCTCTACCCCAAAGCCCGAAAATCCTACGGCAAATT AGAAACACAAATGGAAAACTTCTCTAAAATAATAGAAGACCCAAAAACCAGACTAGAATCTCTCAAAGAAATCCTCGAAA AAATACCAAAAGACTATCTATATTATTCCCGTTATGTGCGAGACCTAAAAACACATAAAACCGCCCTCGAAACAAACATC AAAAATTATGAAATCTGCCTAGAAAAAATTAAAAAAACTAGTGAAATCCCTCCATATTGGCAAGAATTTTTGAATAAAAC CAGCCACATCCGTCACAGACAAATTGAAACCGATATTAACTATCTATCCCCTGGTCAGCAGTTATTTGAACAATTAGTAA ACGCAATTAGAGGCATAGCAGAAACAGACCAATTAGAAAGCGATCGCCACTTAGAAAGAACCATTCAAATTATTGGTATA GGATTAGGAACAGGAGGAATTATTGCTTCTAGTACTGGTCATATTGATGTACCTCTAACCTTCAAATCTACCGGAAAAAT AGAAACAATTCATCCTGTTATTTTGACTTTAATTTTAAGCATTTTAGCCACCCTATTAGCAGGAGGAATAACCTGGCATC TTACCAAACCTAAAAACAAAAAATAA
Upstream 100 bases:
>100_bases AAACCCAAAAAAGTAGTATTAATATCTATAGAAAAACATATATAATAGCCATAAAATTGTAGGCTAGATTGAAAAATGAA ACAAAATACTAAATCTAAAA
Downstream 100 bases:
>100_bases AATAATTAAATGGTAATATTTTATCAAAAAAAATATTACCATTCAGTCCTCAGCTATTAGCTAATTATCTAGGCAAAATT GAGAGATAAATCAATTATCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MKNLTISLLAFHLYSPFLESSETNDQEGKLLWENLTQLGEKSLPFLGLKYLPHQLICYDQNGNYNLDFKTHENNWWMSRS KQTIDLGVIEIEECKIAGNLQPFILNDTYAADLTLTPKLSEEKLDISQLKKFPINNLLPSSIQASLGETFLIYGEIDSEV NPQQIADECVENLFNSAQIEPVFLSQSKLFNSLLFEYQGTELNQNNNQSQPFKILVLLKNSQAETLKLAEKSYEWILQLL CCRHKINFIYQESRNLYPKARKSYGKLETQMENFSKIIEDPKTRLESLKEILEKIPKDYLYYSRYVRDLKTHKTALETNI KNYEICLEKIKKTSEIPPYWQEFLNKTSHIRHRQIETDINYLSPGQQLFEQLVNAIRGIAETDQLESDRHLERTIQIIGI GLGTGGIIASSTGHIDVPLTFKSTGKIETIHPVILTLILSILATLLAGGITWHLTKPKNKK
Sequences:
>Translated_461_residues MKNLTISLLAFHLYSPFLESSETNDQEGKLLWENLTQLGEKSLPFLGLKYLPHQLICYDQNGNYNLDFKTHENNWWMSRS KQTIDLGVIEIEECKIAGNLQPFILNDTYAADLTLTPKLSEEKLDISQLKKFPINNLLPSSIQASLGETFLIYGEIDSEV NPQQIADECVENLFNSAQIEPVFLSQSKLFNSLLFEYQGTELNQNNNQSQPFKILVLLKNSQAETLKLAEKSYEWILQLL CCRHKINFIYQESRNLYPKARKSYGKLETQMENFSKIIEDPKTRLESLKEILEKIPKDYLYYSRYVRDLKTHKTALETNI KNYEICLEKIKKTSEIPPYWQEFLNKTSHIRHRQIETDINYLSPGQQLFEQLVNAIRGIAETDQLESDRHLERTIQIIGI GLGTGGIIASSTGHIDVPLTFKSTGKIETIHPVILTLILSILATLLAGGITWHLTKPKNKK >Mature_461_residues MKNLTISLLAFHLYSPFLESSETNDQEGKLLWENLTQLGEKSLPFLGLKYLPHQLICYDQNGNYNLDFKTHENNWWMSRS KQTIDLGVIEIEECKIAGNLQPFILNDTYAADLTLTPKLSEEKLDISQLKKFPINNLLPSSIQASLGETFLIYGEIDSEV NPQQIADECVENLFNSAQIEPVFLSQSKLFNSLLFEYQGTELNQNNNQSQPFKILVLLKNSQAETLKLAEKSYEWILQLL CCRHKINFIYQESRNLYPKARKSYGKLETQMENFSKIIEDPKTRLESLKEILEKIPKDYLYYSRYVRDLKTHKTALETNI KNYEICLEKIKKTSEIPPYWQEFLNKTSHIRHRQIETDINYLSPGQQLFEQLVNAIRGIAETDQLESDRHLERTIQIIGI GLGTGGIIASSTGHIDVPLTFKSTGKIETIHPVILTLILSILATLLAGGITWHLTKPKNKK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53044; Mature: 53044
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKNLTISLLAFHLYSPFLESSETNDQEGKLLWENLTQLGEKSLPFLGLKYLPHQLICYDQ CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEC NGNYNLDFKTHENNWWMSRSKQTIDLGVIEIEECKIAGNLQPFILNDTYAADLTLTPKLS CCCEEEEEEECCCCEEECCCCCEEEEEEEEEEEEEECCCCCCEEECCCEEECEEECCCCC EEKLDISQLKKFPINNLLPSSIQASLGETFLIYGEIDSEVNPQQIADECVENLFNSAQIE CCCCCHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC PVFLSQSKLFNSLLFEYQGTELNQNNNQSQPFKILVLLKNSQAETLKLAEKSYEWILQLL EEEECHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH CCRHKINFIYQESRNLYPKARKSYGKLETQMENFSKIIEDPKTRLESLKEILEKIPKDYL HHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHH YYSRYVRDLKTHKTALETNIKNYEICLEKIKKTSEIPPYWQEFLNKTSHIRHRQIETDIN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC YLSPGQQLFEQLVNAIRGIAETDQLESDRHLERTIQIIGIGLGTGGIIASSTGHIDVPLT CCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHEEEEEEEEECCCCEEECCCCCEEEEEE FKSTGKIETIHPVILTLILSILATLLAGGITWHLTKPKNKK ECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC >Mature Secondary Structure MKNLTISLLAFHLYSPFLESSETNDQEGKLLWENLTQLGEKSLPFLGLKYLPHQLICYDQ CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCEEEEEEC NGNYNLDFKTHENNWWMSRSKQTIDLGVIEIEECKIAGNLQPFILNDTYAADLTLTPKLS CCCEEEEEEECCCCEEECCCCCEEEEEEEEEEEEEECCCCCCEEECCCEEECEEECCCCC EEKLDISQLKKFPINNLLPSSIQASLGETFLIYGEIDSEVNPQQIADECVENLFNSAQIE CCCCCHHHHHHCCCCCCCCHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC PVFLSQSKLFNSLLFEYQGTELNQNNNQSQPFKILVLLKNSQAETLKLAEKSYEWILQLL EEEECHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH CCRHKINFIYQESRNLYPKARKSYGKLETQMENFSKIIEDPKTRLESLKEILEKIPKDYL HHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCHHHH YYSRYVRDLKTHKTALETNIKNYEICLEKIKKTSEIPPYWQEFLNKTSHIRHRQIETDIN HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCC YLSPGQQLFEQLVNAIRGIAETDQLESDRHLERTIQIIGIGLGTGGIIASSTGHIDVPLT CCCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHEEEEEEEEECCCCEEECCCCCEEEEEE FKSTGKIETIHPVILTLILSILATLLAGGITWHLTKPKNKK ECCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA