| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475188
Identifier: 113475188
GI number: 113475188
Start: 2260811
End: 2262151
Strand: Reverse
Name: 113475188
Synonym: Tery_1488
Alternate gene names: NA
Gene position: 2262151-2260811 (Counterclockwise)
Preceding gene: 113475195
Following gene: 113475187
Centisome position: 29.19
GC content: 31.25
Gene sequence:
>1341_bases TTGGATAAAAAAAAATATCAAAAAAATCAGAAAAATTTGCCAGAATTACCTGTTAAACTAGGGGATAAAAAGGCTCTATT GACACAATATTCTTCTCAAATAAATAAACATAAACAAGTATTAGAAGAATATTCTAATAAACTTGGTAAGTGGGTAGAAG AATTTAAAAAAAATCAGGAACCGAGAGTAGCACAATCACCTATTGTTCCTACCACTCAAGAAATTATACCGAAAAAGCTT AAAAGTAAAAATATGACAAGATGTTCTCAAACAGTTGAAAATTCCATTGTAGAAATAATAGATATTATTTTAGAACCTGT GGACGCTTACCTGTGGGGATTCAATATAGATTTACCGCAAAAAGGAGATAAATTTAATAGTTATGTCATAGAAATAATTG GTTGGGTTTTAGGGAAAAAATCTCCAGCTATGAAAATAGAAATAGTTAAAGACGAGCGGGTAATTAATCAGGCTTTGATT AGAAAACAGCGACTAGGTGTAGCTAAACATTATCAAAAATTACCAAAAGCTAAAAAATGTGGTTTTGTAGCCGAATTAGG AATAGCTGGAATGCCACAAAAAACCACAGCAGATTTGACGATTAGAGCTGTTCTTAAAGATAAAACTATTGTTCCTCTGG CTTCAGTGAAATTGCAATTTCATCCCCCCCAAGCTCTAGGGGTAGTTTACATAGCAATGGGTAAGAAATATATTGAGGAA GCAAAGATTTCTGCAGCAAGTTTAAAAGCTAAAATGCCGAATATTCCAGTCACAATTTTTGCTAATCAAGAAGTTAATGA GCAAGAATTTGATAAATCTGTGGTAGTAAAGAAGTCATATTATAGCTTTGAAGATAAAGTAGTTTATATGTATGATTCTC CTTATGAATACACTTTATTTCTGGATACTGATACTTATATATGTGAAGATTTTTCCGAGTTATTTGCTATCTTAGATAAT TTTGATATTGCAGCAGTTCATGCTCCAACAAAAATACCGGGTATTGTTAATGGAGTGCCAGAATGTTATCAACAAATGAA TACAGGAGTCATTTTATTTAAGAAGTCTCCAGAAGTGAAAAAGTTTTTTGAATATTGGGTAAAATTATATAAGTCAGGAG AACCAGATCAACCTAGTTTTAGAGAAGCATTATTTAATAGTCAATTGAGAATAGCTACTTTAACAGCAGAATATAATTGT CGATTTCCTTTCCCATTTTTTGTATGTGGAACTGTAAAAATACTTCACGGGAGACATCCTAATCTGGATGATGTTGCGCA AAAAATTAATTCTGAAAAAGGTCTAAGAGTATATAAAGCTAATTATTTTAAATTCGAGTAA
Upstream 100 bases:
>100_bases ATGAAGCTATTAAATTAAACTAATGTTTGCTTGATTAAAAAGCTGAAAGTTTACTACTAATAGCCGAATACTTACATAAA AAAATCGGGCATCATAAAAA
Downstream 100 bases:
>100_bases ATTTAGGAATTAGCTGTTAGGTATCAGCCATTTTTTAGTTTTAGATCATAGCTTTATTCATTAATCATAATTAAATCTGG CTACAAAAGCAGACTAAAAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE
Sequences:
>Translated_446_residues MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE >Mature_446_residues MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQEPRVAQSPIVPTTQEIIPKKL KSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQKGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALI RKQRLGVAKHYQKLPKAKKCGFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLFLDTDTYICEDFSELFAILDN FDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVKKFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNC RFPFPFFVCGTVKILHGRHPNLDDVAQKINSEKGLRVYKANYFKFE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51080; Mature: 51080
Theoretical pI: Translated: 9.61; Mature: 9.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQE CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PRVAQSPIVPTTQEIIPKKLKSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQ CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC KGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALIRKQRLGVAKHYQKLPKAKKC CCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHCCCHHHC GFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE CCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCHHHHEEEEHHHHHHHHH AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLF HHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCEEEEEE LDTDTYICEDFSELFAILDNFDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVK EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHCCCEEEEECCCCHH KFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNCRFPFPFFVCGTVKILHGRHP HHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCC NLDDVAQKINSEKGLRVYKANYFKFE CHHHHHHHHCCCCCCEEEEECCEECC >Mature Secondary Structure MDKKKYQKNQKNLPELPVKLGDKKALLTQYSSQINKHKQVLEEYSNKLGKWVEEFKKNQE CCCHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC PRVAQSPIVPTTQEIIPKKLKSKNMTRCSQTVENSIVEIIDIILEPVDAYLWGFNIDLPQ CCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC KGDKFNSYVIEIIGWVLGKKSPAMKIEIVKDERVINQALIRKQRLGVAKHYQKLPKAKKC CCCHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHCCHHHHHHHCCCHHHC GFVAELGIAGMPQKTTADLTIRAVLKDKTIVPLASVKLQFHPPQALGVVYIAMGKKYIEE CCHHHCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEEECCCHHHHEEEEHHHHHHHHH AKISAASLKAKMPNIPVTIFANQEVNEQEFDKSVVVKKSYYSFEDKVVYMYDSPYEYTLF HHHHHHHHHHCCCCCCEEEEECCCCCHHHHCCCEEEEECCCCCCCCEEEEECCCEEEEEE LDTDTYICEDFSELFAILDNFDIAAVHAPTKIPGIVNGVPECYQQMNTGVILFKKSPEVK EECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHCCHHHHHHHHCCCEEEEECCCCHH KFFEYWVKLYKSGEPDQPSFREALFNSQLRIATLTAEYNCRFPFPFFVCGTVKILHGRHP HHHHHHHHHHHCCCCCCCHHHHHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHEECCCCC NLDDVAQKINSEKGLRVYKANYFKFE CHHHHHHHHCCCCCCEEEEECCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA