| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475186
Identifier: 113475186
GI number: 113475186
Start: 2257131
End: 2258564
Strand: Reverse
Name: 113475186
Synonym: Tery_1486
Alternate gene names: NA
Gene position: 2258564-2257131 (Counterclockwise)
Preceding gene: 113475187
Following gene: 113475185
Centisome position: 29.14
GC content: 32.29
Gene sequence:
>1434_bases ATGGTAATTAGTTCTAATTTCAAAGAAATGAAAGACAAAAAAACAGGAGTGGAAATTATTTCTGTTCATGTGCCAAAAAC TGCTGGTTCAGCTTTTACTAGGGTTTTATTCAAAGTGTACAGTCCAGAAGCAGTATTTTTGGATTATCCTTATGAAAAAG ATTACCAACGTCAGTTTATGAAAGAAGGAGATGCTAATGTAAGGGTGATTCACGGGCATTTTCCTGGGTCTAGATATAAG CATAAATTTGCGGATGCTAAAAGAATTATTTGGCTGAGAGAACCAGTTAATTTTTTAATATCTTATTACTGTTTTAATAA GGTATTTAGACGGACAGTATTTTATGATTTGCTACAGCAGAAAAATTTTAGTTTTTGGGAGTTTGCTCAAATACCTGAAA ATCAAAATATAATGTCAGTTTATCTGCGAGATATGAAACTAGAAGATTTCTTCTTTGTAGGGATACAGGAATTTTTTGAG GAAGATTTACAGCAATTAAAAAATCTTCTTTTTTGGCCAGATGTAACAGTTAGCCAAGAAAATAATAATATTTATTCTGA TTATCAAAGAATTAAAAAAGAGGTGTTCAACGATCGCTCTATTGTCAAGAAAGTAGCGACTCTTAATAGTGAGGATATGG AAATTTATAAACAGGCATTAAGTATCAGAGAAAAGCGTTACAGTCAAACTTTGCAAAAACCACAAAAAAATAAGATTAAA CAGCAACAAAATCAGCAGGTGAGGAGTGTTGTTAAAAGTAGTAAAATTGAGCATAAATCTAATCCAGTGAAAGAGGCGAT CGCGAATAATAACCTAGAAAATTTATTTGACAGCAAGTTGTGGTGTAAAAAGGGACATTTGAACCCAGATCAAGCAATTT TCATTAGTAATCTTTGTAAGATAATTCAGCCGAAAAATGTTTTAGAAACTGGTTTTGCCACAGGTAGGTCCGCGGCAGTA GTATTAAGTTCTTGTAGTCCGAAAACTTTTATATCTTTGGATAAAAACCTGGATTATATAACTCCCTTTGGCAGAGAAAT GGCTTCTATATTAATGGGAGAATTTCAACACTATCAAATTATTGAAGGGGATAGTAACGAATTCCTTAATCCTGAATTTT ACCAAAAAAATTATTCGCCAGGTTTAGATTTGTTTACTGTTAATGGAGACCATTCTTATAAAGGATGTTTTCACGATTTA GAATCCTCACTTCCTTTTTTAAATCCCCAGGGAATTATTATAGTAGATGATTATAAATCAAAGCCTCCTAAAGGTGTGAG ATTTCCTGCAGTTAATAGAGCAGTTAGGGATTTTTGTAATCGTTATCCAGAAGTACATAAACTTGAATGGCACAAAGATG GAAAAGGTTTTGCTATTTTATGTAAATCTCCTAAACAATTAAAAAGAATTGCTAACTTGCTCCAGCTTCAATAA
Upstream 100 bases:
>100_bases TTTGCAAGAATTTGGTTATAGCTAAGTTAATTAATGGATAAAGGAAATATAGTATAGTAATAATTTTGATATTTGGTATG ATCAGGAGCAGAATAAATTA
Downstream 100 bases:
>100_bases CCTCAAAAGTCTTCAATAGAAAGAGTGGGGAATAGGAAAAAATTAAAAACATTTTGCGCTCTTTTTATTTTCTCAAGTAA ATTTAACGAAAAATAAATTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 477; Mature: 477
Protein sequence:
>477_residues MVISSNFKEMKDKKTGVEIISVHVPKTAGSAFTRVLFKVYSPEAVFLDYPYEKDYQRQFMKEGDANVRVIHGHFPGSRYK HKFADAKRIIWLREPVNFLISYYCFNKVFRRTVFYDLLQQKNFSFWEFAQIPENQNIMSVYLRDMKLEDFFFVGIQEFFE EDLQQLKNLLFWPDVTVSQENNNIYSDYQRIKKEVFNDRSIVKKVATLNSEDMEIYKQALSIREKRYSQTLQKPQKNKIK QQQNQQVRSVVKSSKIEHKSNPVKEAIANNNLENLFDSKLWCKKGHLNPDQAIFISNLCKIIQPKNVLETGFATGRSAAV VLSSCSPKTFISLDKNLDYITPFGREMASILMGEFQHYQIIEGDSNEFLNPEFYQKNYSPGLDLFTVNGDHSYKGCFHDL ESSLPFLNPQGIIIVDDYKSKPPKGVRFPAVNRAVRDFCNRYPEVHKLEWHKDGKGFAILCKSPKQLKRIANLLQLQ
Sequences:
>Translated_477_residues MVISSNFKEMKDKKTGVEIISVHVPKTAGSAFTRVLFKVYSPEAVFLDYPYEKDYQRQFMKEGDANVRVIHGHFPGSRYK HKFADAKRIIWLREPVNFLISYYCFNKVFRRTVFYDLLQQKNFSFWEFAQIPENQNIMSVYLRDMKLEDFFFVGIQEFFE EDLQQLKNLLFWPDVTVSQENNNIYSDYQRIKKEVFNDRSIVKKVATLNSEDMEIYKQALSIREKRYSQTLQKPQKNKIK QQQNQQVRSVVKSSKIEHKSNPVKEAIANNNLENLFDSKLWCKKGHLNPDQAIFISNLCKIIQPKNVLETGFATGRSAAV VLSSCSPKTFISLDKNLDYITPFGREMASILMGEFQHYQIIEGDSNEFLNPEFYQKNYSPGLDLFTVNGDHSYKGCFHDL ESSLPFLNPQGIIIVDDYKSKPPKGVRFPAVNRAVRDFCNRYPEVHKLEWHKDGKGFAILCKSPKQLKRIANLLQLQ >Mature_477_residues MVISSNFKEMKDKKTGVEIISVHVPKTAGSAFTRVLFKVYSPEAVFLDYPYEKDYQRQFMKEGDANVRVIHGHFPGSRYK HKFADAKRIIWLREPVNFLISYYCFNKVFRRTVFYDLLQQKNFSFWEFAQIPENQNIMSVYLRDMKLEDFFFVGIQEFFE EDLQQLKNLLFWPDVTVSQENNNIYSDYQRIKKEVFNDRSIVKKVATLNSEDMEIYKQALSIREKRYSQTLQKPQKNKIK QQQNQQVRSVVKSSKIEHKSNPVKEAIANNNLENLFDSKLWCKKGHLNPDQAIFISNLCKIIQPKNVLETGFATGRSAAV VLSSCSPKTFISLDKNLDYITPFGREMASILMGEFQHYQIIEGDSNEFLNPEFYQKNYSPGLDLFTVNGDHSYKGCFHDL ESSLPFLNPQGIIIVDDYKSKPPKGVRFPAVNRAVRDFCNRYPEVHKLEWHKDGKGFAILCKSPKQLKRIANLLQLQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55733; Mature: 55733
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVISSNFKEMKDKKTGVEIISVHVPKTAGSAFTRVLFKVYSPEAVFLDYPYEKDYQRQFM CCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH KEGDANVRVIHGHFPGSRYKHKFADAKRIIWLREPVNFLISYYCFNKVFRRTVFYDLLQQ HCCCCCEEEEEECCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNFSFWEFAQIPENQNIMSVYLRDMKLEDFFFVGIQEFFEEDLQQLKNLLFWPDVTVSQE CCCCCEEHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC NNNIYSDYQRIKKEVFNDRSIVKKVATLNSEDMEIYKQALSIREKRYSQTLQKPQKNKIK CCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QQQNQQVRSVVKSSKIEHKSNPVKEAIANNNLENLFDSKLWCKKGHLNPDQAIFISNLCK HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH IIQPKNVLETGFATGRSAAVVLSSCSPKTFISLDKNLDYITPFGREMASILMGEFQHYQI HHCCCHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE IEGDSNEFLNPEFYQKNYSPGLDLFTVNGDHSYKGCFHDLESSLPFLNPQGIIIVDDYKS EECCCCCCCCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC KPPKGVRFPAVNRAVRDFCNRYPEVHKLEWHKDGKGFAILCKSPKQLKRIANLLQLQ CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHCCC >Mature Secondary Structure MVISSNFKEMKDKKTGVEIISVHVPKTAGSAFTRVLFKVYSPEAVFLDYPYEKDYQRQFM CCCCCCHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH KEGDANVRVIHGHFPGSRYKHKFADAKRIIWLREPVNFLISYYCFNKVFRRTVFYDLLQQ HCCCCCEEEEEECCCCCHHHHHHCCCHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH KNFSFWEFAQIPENQNIMSVYLRDMKLEDFFFVGIQEFFEEDLQQLKNLLFWPDVTVSQE CCCCCEEHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC NNNIYSDYQRIKKEVFNDRSIVKKVATLNSEDMEIYKQALSIREKRYSQTLQKPQKNKIK CCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH QQQNQQVRSVVKSSKIEHKSNPVKEAIANNNLENLFDSKLWCKKGHLNPDQAIFISNLCK HHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHH IIQPKNVLETGFATGRSAAVVLSSCSPKTFISLDKNLDYITPFGREMASILMGEFQHYQI HHCCCHHHHHCCCCCCCCEEEEECCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEE IEGDSNEFLNPEFYQKNYSPGLDLFTVNGDHSYKGCFHDLESSLPFLNPQGIIIVDDYKS EECCCCCCCCCHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCC KPPKGVRFPAVNRAVRDFCNRYPEVHKLEWHKDGKGFAILCKSPKQLKRIANLLQLQ CCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA