| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475165
Identifier: 113475165
GI number: 113475165
Start: 2221744
End: 2222886
Strand: Reverse
Name: 113475165
Synonym: Tery_1463
Alternate gene names: NA
Gene position: 2222886-2221744 (Counterclockwise)
Preceding gene: 113475166
Following gene: 113475163
Centisome position: 28.68
GC content: 27.91
Gene sequence:
>1143_bases ATGGCAAAAGTTGATAAGGAATTTAATTTAAAAGATTGGGAGTGGATAGCAGTTCATTTTCCGCCATCGGAAAGAGAAAG TATGGCTAAAGTGGCTTGGATTATTTGTTGTAAATGTACTCCTGAAAAAATTTATCAACGCAAGATAGACCCAAGAATAG TAATTCCTTTATGTGGGATAGTCTTGCTTGACGAAATTAATATTTTACGACTAAAAATTCATATTTTACAACTAAAAAAG TTGGAAACAGAACTTTCTGATCGCTATTACAAAATATTTGAAAGATGCGAAATATCAGAAGAATTAAAAATCAAACAAGA ACATATTAATGAAATTAAAGAAGATGTTGATGGAATAATACAAGATTTTATAGATTTTGTAATTGATTTAGCTAATCCTA CAGAACGATGGTTATCTCTGTTTAAAACTTTGAATATACATTTACAATTTTCCTTATTCTCTAGTCTTATCAAATATCGC CGTCCAACCCGTTATGACTGGCGTAATATTTTTTCGGATATAAAAGGTGTATTTTTAGGAGCATATTTTTCCGCATTATC TATATCAATTTTAAGCATGTTAATTTCATCAATGGTAATTAAGGTGGCTGATTTTTTTATTGAATTGATTGGTAACATGA ATTTAGTTGTCTTTTATCTTATATTACTTGCAAAATTTTTATTGCTATTTTTAGGAGGTCTTTTATTTTTAGATCATGGA CAAACTGTTCGGCAATTTTCCTTTATTCTAAGATGGCCACTGAGTATTTTTGTTTATACACTAGTTATTATCTATTCAAT TAAATATTATAATCTAGGGCTATTCTTTATTTTTGTAATTATCTCAATAAACGTTTATGGTATATTATTAATGTTTCTGG GGAAATATGCTGTCAACAGTCTGTTAGAACTATTTAGATTAATATTTAGATTAAATGGATATATGTTGCTATTTTATGGG TTATTAACGTTTTCTTTCCCTTGGAAAACAACCTTATTAATCTGGGCAATTATGTTAATTGTTTCCTCAATTTTGTGGAT TTACGCACAAAATTTAGAACGCAAAGTTCATAATCCTCTTAAGAAGATGAAGAATATTTTAAAATATAATAAATATTTCT CGGAATTTAGCAAAGCTCAATAG
Upstream 100 bases:
>100_bases ATTTACTTGATCATTCTGATGAAAAGATTCAAAGGTTAGCTGCTTTAAATCTTGCGGAATTTAGGGGTTTAAATAATTAG GTTTTCTTGGAGTAGTAAAT
Downstream 100 bases:
>100_bases ATTTAGCTGCTGAAGATTAGTAACTAAACAATTATTCTAAATCTGAAAATAGAATAAATATTAAAGTTCAAAAGCTGAAA TTACTCCGGATGAAAATATT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MAKVDKEFNLKDWEWIAVHFPPSERESMAKVAWIICCKCTPEKIYQRKIDPRIVIPLCGIVLLDEINILRLKIHILQLKK LETELSDRYYKIFERCEISEELKIKQEHINEIKEDVDGIIQDFIDFVIDLANPTERWLSLFKTLNIHLQFSLFSSLIKYR RPTRYDWRNIFSDIKGVFLGAYFSALSISILSMLISSMVIKVADFFIELIGNMNLVVFYLILLAKFLLLFLGGLLFLDHG QTVRQFSFILRWPLSIFVYTLVIIYSIKYYNLGLFFIFVIISINVYGILLMFLGKYAVNSLLELFRLIFRLNGYMLLFYG LLTFSFPWKTTLLIWAIMLIVSSILWIYAQNLERKVHNPLKKMKNILKYNKYFSEFSKAQ
Sequences:
>Translated_380_residues MAKVDKEFNLKDWEWIAVHFPPSERESMAKVAWIICCKCTPEKIYQRKIDPRIVIPLCGIVLLDEINILRLKIHILQLKK LETELSDRYYKIFERCEISEELKIKQEHINEIKEDVDGIIQDFIDFVIDLANPTERWLSLFKTLNIHLQFSLFSSLIKYR RPTRYDWRNIFSDIKGVFLGAYFSALSISILSMLISSMVIKVADFFIELIGNMNLVVFYLILLAKFLLLFLGGLLFLDHG QTVRQFSFILRWPLSIFVYTLVIIYSIKYYNLGLFFIFVIISINVYGILLMFLGKYAVNSLLELFRLIFRLNGYMLLFYG LLTFSFPWKTTLLIWAIMLIVSSILWIYAQNLERKVHNPLKKMKNILKYNKYFSEFSKAQ >Mature_379_residues AKVDKEFNLKDWEWIAVHFPPSERESMAKVAWIICCKCTPEKIYQRKIDPRIVIPLCGIVLLDEINILRLKIHILQLKKL ETELSDRYYKIFERCEISEELKIKQEHINEIKEDVDGIIQDFIDFVIDLANPTERWLSLFKTLNIHLQFSLFSSLIKYRR PTRYDWRNIFSDIKGVFLGAYFSALSISILSMLISSMVIKVADFFIELIGNMNLVVFYLILLAKFLLLFLGGLLFLDHGQ TVRQFSFILRWPLSIFVYTLVIIYSIKYYNLGLFFIFVIISINVYGILLMFLGKYAVNSLLELFRLIFRLNGYMLLFYGL LTFSFPWKTTLLIWAIMLIVSSILWIYAQNLERKVHNPLKKMKNILKYNKYFSEFSKAQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45018; Mature: 44886
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKVDKEFNLKDWEWIAVHFPPSERESMAKVAWIICCKCTPEKIYQRKIDPRIVIPLCGI CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCHHHHHHHCCCCEEEHHHHHH VLLDEINILRLKIHILQLKKLETELSDRYYKIFERCEISEELKIKQEHINEIKEDVDGII HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH QDFIDFVIDLANPTERWLSLFKTLNIHLQFSLFSSLIKYRRPTRYDWRNIFSDIKGVFLG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AYFSALSISILSMLISSMVIKVADFFIELIGNMNLVVFYLILLAKFLLLFLGGLLFLDHG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC QTVRQFSFILRWPLSIFVYTLVIIYSIKYYNLGLFFIFVIISINVYGILLMFLGKYAVNS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLELFRLIFRLNGYMLLFYGLLTFSFPWKTTLLIWAIMLIVSSILWIYAQNLERKVHNPL HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKMKNILKYNKYFSEFSKAQ HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AKVDKEFNLKDWEWIAVHFPPSERESMAKVAWIICCKCTPEKIYQRKIDPRIVIPLCGI CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHEECCCHHHHHHHCCCCEEEHHHHHH VLLDEINILRLKIHILQLKKLETELSDRYYKIFERCEISEELKIKQEHINEIKEDVDGII HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH QDFIDFVIDLANPTERWLSLFKTLNIHLQFSLFSSLIKYRRPTRYDWRNIFSDIKGVFLG HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH AYFSALSISILSMLISSMVIKVADFFIELIGNMNLVVFYLILLAKFLLLFLGGLLFLDHG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC QTVRQFSFILRWPLSIFVYTLVIIYSIKYYNLGLFFIFVIISINVYGILLMFLGKYAVNS CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLELFRLIFRLNGYMLLFYGLLTFSFPWKTTLLIWAIMLIVSSILWIYAQNLERKVHNPL HHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KKMKNILKYNKYFSEFSKAQ HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA