| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475166
Identifier: 113475166
GI number: 113475166
Start: 2222907
End: 2223434
Strand: Reverse
Name: 113475166
Synonym: Tery_1464
Alternate gene names: NA
Gene position: 2223434-2222907 (Counterclockwise)
Preceding gene: 113475167
Following gene: 113475165
Centisome position: 28.69
GC content: 36.55
Gene sequence:
>528_bases TTGACGGCTTTTGAATGTTTAGCGGATGCTCAAGAAGTTTCTCCTGAGTTGGCGGAGAAAATTATTGAAGAGTTTAAGGA AAAATTGGGAGAAGCAAATTATGATGAAAATTTGGCTAGAGCTTTTGGAGCAGTTGCTTCTGATATTCGTCCGAGTGGTA GGGGAAAAGTTGTTTTTGAGTTCCTAGAAAATGCTTTGAATTATTCTGAAGATCTGGAAATTCGTCGGGCTTCTGTTAAG GTATTATCTAAGACAAATTTGCCACAAGCTGCGGATATTTTGTTTAGGTATTATGAGGATATTAATTTGGTAGATGCTCG TCAAGCTCTTATTAATATGGGGGATATTGCAGTCTCTTTATTGAAGGGTTTAGCGGAGAAAGGTTCGGAAATAGCAATGG GAGATTTAGTGAAAATTGGTACTCCTTATGGGAGAGAAGTTTTAAGTGATTTACTTGATCATTCTGATGAAAAGATTCAA AGGTTAGCTGCTTTAAATCTTGCGGAATTTAGGGGTTTAAATAATTAG
Upstream 100 bases:
>100_bases TAAAAATGACCCGAAACGTTGGCGATAAACGGTCAAACTTTGGTGTGGGTTTGCGGGAAATAGTACAAATTTAATAGGGG TTATTTATCAGGAAGATTCT
Downstream 100 bases:
>100_bases GTTTTCTTGGAGTAGTAAATATGGCAAAAGTTGATAAGGAATTTAATTTAAAAGATTGGGAGTGGATAGCAGTTCATTTT CCGCCATCGGAAAGAGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MTAFECLADAQEVSPELAEKIIEEFKEKLGEANYDENLARAFGAVASDIRPSGRGKVVFEFLENALNYSEDLEIRRASVK VLSKTNLPQAADILFRYYEDINLVDARQALINMGDIAVSLLKGLAEKGSEIAMGDLVKIGTPYGREVLSDLLDHSDEKIQ RLAALNLAEFRGLNN
Sequences:
>Translated_175_residues MTAFECLADAQEVSPELAEKIIEEFKEKLGEANYDENLARAFGAVASDIRPSGRGKVVFEFLENALNYSEDLEIRRASVK VLSKTNLPQAADILFRYYEDINLVDARQALINMGDIAVSLLKGLAEKGSEIAMGDLVKIGTPYGREVLSDLLDHSDEKIQ RLAALNLAEFRGLNN >Mature_174_residues TAFECLADAQEVSPELAEKIIEEFKEKLGEANYDENLARAFGAVASDIRPSGRGKVVFEFLENALNYSEDLEIRRASVKV LSKTNLPQAADILFRYYEDINLVDARQALINMGDIAVSLLKGLAEKGSEIAMGDLVKIGTPYGREVLSDLLDHSDEKIQR LAALNLAEFRGLNN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19351; Mature: 19220
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAFECLADAQEVSPELAEKIIEEFKEKLGEANYDENLARAFGAVASDIRPSGRGKVVFE CCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH FLENALNYSEDLEIRRASVKVLSKTNLPQAADILFRYYEDINLVDARQALINMGDIAVSL HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LKGLAEKGSEIAMGDLVKIGTPYGREVLSDLLDHSDEKIQRLAALNLAEFRGLNN HHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TAFECLADAQEVSPELAEKIIEEFKEKLGEANYDENLARAFGAVASDIRPSGRGKVVFE CHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH FLENALNYSEDLEIRRASVKVLSKTNLPQAADILFRYYEDINLVDARQALINMGDIAVSL HHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH LKGLAEKGSEIAMGDLVKIGTPYGREVLSDLLDHSDEKIQRLAALNLAEFRGLNN HHHHHHCCCCCHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA