| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475163
Identifier: 113475163
GI number: 113475163
Start: 2209909
End: 2212056
Strand: Reverse
Name: 113475163
Synonym: Tery_1461
Alternate gene names: NA
Gene position: 2212056-2209909 (Counterclockwise)
Preceding gene: 113475165
Following gene: 113475161
Centisome position: 28.54
GC content: 31.47
Gene sequence:
>2148_bases ATGGATATTGAACGTGAGATAAACTCATTTTTTTCTGATTTATTCGGCACAAAAGCTGATAGTAAAAGTGATTTATTTTC ACTTTCAAATCATAAGATTAATTATTTCGATTCTACTTCAGATATTACCATAAAAAATTCAACTTTAGAGGATAATATAA ACTCTACTGAATATTCGCTTGGTTCTTATAATTTCCTAGGAAATGAATTAGAATCTATCTCTATTAGAGATTCTGCAAGT GTTGAAAATACAGAAGAAATTGATAAAATTACAGGTGATAATTTTGATACAAATATTCAGTTAAGAGCTGGTCAAAAGTC AGATAATAAGATTGATACTGCAACTGAAATAGATATAGTTTCTGGTGAGAAAGTTAAGATAAACGATAGAATTGGCTACA AAGAAAAGGGCAAGGTTGATAAATATGACTACTATAGTTTCGGCATATCTGAAAATATGGAAGTAAGTATTGATATGGAT AAACTCCAGAAAAATGCTAATCTTCACTTATTTGATGAAAGTGGTAAAAAAGTATTGGCAAAGTCGAATAAAAGAGGTAA AAAATCAGAAAATATTACTGAATATTTAGATGCAGGAGATTATTATCTGCGGGTATCTGCTGTGGGAAATGCAAAAACTC CTTATCGCTTGATTTTAGAAAAAGTTCCTGATGATAAAAATATAGATGGAGCGAATGATTTAGGAAAATTATCTCAGAAA GAACTGAAACTTAATGATAAAATTGGCTACAAAAAAAAGGGCAAGGTTGATAAATATGACTACTATAGTTTCGGCATATC TGAAGATATGAAAGTAAATATTGAGATGGATAAACTCCAGAAAAATGCTAATCTTCACTTATTTGATGAAAGTGGTAAAA AAGTATTGGCAAAGTCGAATAAAAGAGGTAAAAAATCAGAAAATATTACTGAATATTTAGATGCAGGAGATTATTATCTG CGGGTATCTGCTGTGGGAAATGCAAAAACTCCTTATCGCTTGATTTTAGAAAACGTTCCTGATGATAAAAGTATAGATGG AGCGAATAATTTAGGAAAATTATCTCAGAAAGAACTGAAAGTTAATGATAAAATTGGCTACAGAGAAAATGGTAAACGAG ATGGAATAGATTTGTATTTTTTTGAGATTAACGAAGAACAAGAAGTAGATATTAATCTGAATAAACTGAAGCAAAACTCT AATCTAAGATTAATTGATGAAGACGGTGAAACAGTTTTGGATAAATCGACTAACAAGGGTAAAAATTCAGAAAAAATTAC AGAAGTTTTAGAACCAGGAATTTATTATGTAGAAGTTTATGCTCAAGGTAATGCTAAAACAAATTATGAACTTAGTTTGA GTTCTCAGGAGGTTAATACAGTTTTTCCATCGGTATTAGAAACTTATGAATCAGGTACACGAGTAGGGTTTGAAAACCGA GTTTCTTTGGAAATACCTGAAGGATGGGTTGGTAAACAAAAATCAATGTTTGAAACAATATTTGAAGGAAGATCGTTTGT TGATGGTCAGTATTTTCCATTTACACTAACCTCTACAAAGTATCCAGATGTCTATGTAGAATTAAGCGTCAGATCGAATT ATTTGACAGGGCTTATACAGAACTTGGCTAATACCTGGGCAATTGACGAAACCACCTATGAACCACAAGGAAAAGCAAAG GTAAAAGGTAATCAAATTACTAATACTTATACTGCCAAAAATTCAATATCTCAAGAAAAGTATTATGTGGTTAGTACTGT AGGGCCTAATGATGAAATTGCTACTGTGACAGTGGGTGGTTCTGTTAATAAACTAAAAGACTATAAAGATATCGCAAATG ATGTAGTTGAAAGTCTAGATTTTCCTGAACCTACTGACTGGGAAGAATTCTTTAGTGATCATTGGTTAGCTTACGCTCCG TATGGGAGCATATATGAAGGAATTTTCCTGGACGATGATCGTTCATTTTATCACATTTATGATTATTCAACGAATCGTTT TGGTACTTGGGATATTACTCAAAAAGATGAGCTAGTATTAAGATATGAAAATGGTGAAGAAAAGGTTGGGCAACTTGATG GTCCTAGTGTATCTAATAATATTATTTACGGTGAATTTGTTTATCAGGCGATAGAGAAAAATAGCTGA
Upstream 100 bases:
>100_bases AAAAAACTGAACAAATAATTAAAATTAACCCGAGAAAAACATAATCATGATAACTTCGATGTAAAATCAATTATTTATAT AATTTTGGAGGGCAAAGACA
Downstream 100 bases:
>100_bases TAGTTAGTGTTTTTGAGTAAGCCCTATTTAGACAAAACTTCCGCATTTTTTAGTTCTAAATACTATATATCTATAAAGTA AAAGTTGTTAGTCAACTATT
Product: peptidase-like protein
Products: NA
Alternate protein names: YD Repeat-Containing Protein; Peptidase
Number of amino acids: Translated: 715; Mature: 715
Protein sequence:
>715_residues MDIEREINSFFSDLFGTKADSKSDLFSLSNHKINYFDSTSDITIKNSTLEDNINSTEYSLGSYNFLGNELESISIRDSAS VENTEEIDKITGDNFDTNIQLRAGQKSDNKIDTATEIDIVSGEKVKINDRIGYKEKGKVDKYDYYSFGISENMEVSIDMD KLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILEKVPDDKNIDGANDLGKLSQK ELKLNDKIGYKKKGKVDKYDYYSFGISEDMKVNIEMDKLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYL RVSAVGNAKTPYRLILENVPDDKSIDGANNLGKLSQKELKVNDKIGYRENGKRDGIDLYFFEINEEQEVDINLNKLKQNS NLRLIDEDGETVLDKSTNKGKNSEKITEVLEPGIYYVEVYAQGNAKTNYELSLSSQEVNTVFPSVLETYESGTRVGFENR VSLEIPEGWVGKQKSMFETIFEGRSFVDGQYFPFTLTSTKYPDVYVELSVRSNYLTGLIQNLANTWAIDETTYEPQGKAK VKGNQITNTYTAKNSISQEKYYVVSTVGPNDEIATVTVGGSVNKLKDYKDIANDVVESLDFPEPTDWEEFFSDHWLAYAP YGSIYEGIFLDDDRSFYHIYDYSTNRFGTWDITQKDELVLRYENGEEKVGQLDGPSVSNNIIYGEFVYQAIEKNS
Sequences:
>Translated_715_residues MDIEREINSFFSDLFGTKADSKSDLFSLSNHKINYFDSTSDITIKNSTLEDNINSTEYSLGSYNFLGNELESISIRDSAS VENTEEIDKITGDNFDTNIQLRAGQKSDNKIDTATEIDIVSGEKVKINDRIGYKEKGKVDKYDYYSFGISENMEVSIDMD KLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILEKVPDDKNIDGANDLGKLSQK ELKLNDKIGYKKKGKVDKYDYYSFGISEDMKVNIEMDKLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYL RVSAVGNAKTPYRLILENVPDDKSIDGANNLGKLSQKELKVNDKIGYRENGKRDGIDLYFFEINEEQEVDINLNKLKQNS NLRLIDEDGETVLDKSTNKGKNSEKITEVLEPGIYYVEVYAQGNAKTNYELSLSSQEVNTVFPSVLETYESGTRVGFENR VSLEIPEGWVGKQKSMFETIFEGRSFVDGQYFPFTLTSTKYPDVYVELSVRSNYLTGLIQNLANTWAIDETTYEPQGKAK VKGNQITNTYTAKNSISQEKYYVVSTVGPNDEIATVTVGGSVNKLKDYKDIANDVVESLDFPEPTDWEEFFSDHWLAYAP YGSIYEGIFLDDDRSFYHIYDYSTNRFGTWDITQKDELVLRYENGEEKVGQLDGPSVSNNIIYGEFVYQAIEKNS >Mature_715_residues MDIEREINSFFSDLFGTKADSKSDLFSLSNHKINYFDSTSDITIKNSTLEDNINSTEYSLGSYNFLGNELESISIRDSAS VENTEEIDKITGDNFDTNIQLRAGQKSDNKIDTATEIDIVSGEKVKINDRIGYKEKGKVDKYDYYSFGISENMEVSIDMD KLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILEKVPDDKNIDGANDLGKLSQK ELKLNDKIGYKKKGKVDKYDYYSFGISEDMKVNIEMDKLQKNANLHLFDESGKKVLAKSNKRGKKSENITEYLDAGDYYL RVSAVGNAKTPYRLILENVPDDKSIDGANNLGKLSQKELKVNDKIGYRENGKRDGIDLYFFEINEEQEVDINLNKLKQNS NLRLIDEDGETVLDKSTNKGKNSEKITEVLEPGIYYVEVYAQGNAKTNYELSLSSQEVNTVFPSVLETYESGTRVGFENR VSLEIPEGWVGKQKSMFETIFEGRSFVDGQYFPFTLTSTKYPDVYVELSVRSNYLTGLIQNLANTWAIDETTYEPQGKAK VKGNQITNTYTAKNSISQEKYYVVSTVGPNDEIATVTVGGSVNKLKDYKDIANDVVESLDFPEPTDWEEFFSDHWLAYAP YGSIYEGIFLDDDRSFYHIYDYSTNRFGTWDITQKDELVLRYENGEEKVGQLDGPSVSNNIIYGEFVYQAIEKNS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81164; Mature: 81164
Theoretical pI: Translated: 4.54; Mature: 4.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 0.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 0.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDIEREINSFFSDLFGTKADSKSDLFSLSNHKINYFDSTSDITIKNSTLEDNINSTEYSL CCHHHHHHHHHHHHHCCCCCCCHHHEECCCCEEEEECCCCCEEEECCCCCCCCCCCEEEC GSYNFLGNELESISIRDSASVENTEEIDKITGDNFDTNIQLRAGQKSDNKIDTATEIDIV CCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEE SGEKVKINDRIGYKEKGKVDKYDYYSFGISENMEVSIDMDKLQKNANLHLFDESGKKVLA CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHCCCCEEEECCCCCEEEC KSNKRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILEKVPDDKNIDGANDLGKLSQK CCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH ELKLNDKIGYKKKGKVDKYDYYSFGISEDMKVNIEMDKLQKNANLHLFDESGKKVLAKSN HEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHCCCCEEEECCCCCEEECCCC KRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILENVPDDKSIDGANNLGKLSQKELK CCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHEE VNDKIGYRENGKRDGIDLYFFEINEEQEVDINLNKLKQNSNLRLIDEDGETVLDKSTNKG ECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHCCCCCEEEECCCCCEEECCCCCCC KNSEKITEVLEPGIYYVEVYAQGNAKTNYELSLSSQEVNTVFPSVLETYESGTRVGFENR CCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCE VSLEIPEGWVGKQKSMFETIFEGRSFVDGQYFPFTLTSTKYPDVYVELSVRSNYLTGLIQ EEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHH NLANTWAIDETTYEPQGKAKVKGNQITNTYTAKNSISQEKYYVVSTVGPNDEIATVTVGG HHHHCEECCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECC SVNKLKDYKDIANDVVESLDFPEPTDWEEFFSDHWLAYAPYGSIYEGIFLDDDRSFYHIY CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCCCCCCCEEEECCCCEEEEE DYSTNRFGTWDITQKDELVLRYENGEEKVGQLDGPSVSNNIIYGEFVYQAIEKNS ECCCCCEEEEECCCCCCEEEEECCCCHHCCCCCCCCCCCCEEEHHHHHHHHHCCC >Mature Secondary Structure MDIEREINSFFSDLFGTKADSKSDLFSLSNHKINYFDSTSDITIKNSTLEDNINSTEYSL CCHHHHHHHHHHHHHCCCCCCCHHHEECCCCEEEEECCCCCEEEECCCCCCCCCCCEEEC GSYNFLGNELESISIRDSASVENTEEIDKITGDNFDTNIQLRAGQKSDNKIDTATEIDIV CCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCEEEEEE SGEKVKINDRIGYKEKGKVDKYDYYSFGISENMEVSIDMDKLQKNANLHLFDESGKKVLA CCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHCCCCEEEECCCCCEEEC KSNKRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILEKVPDDKNIDGANDLGKLSQK CCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHH ELKLNDKIGYKKKGKVDKYDYYSFGISEDMKVNIEMDKLQKNANLHLFDESGKKVLAKSN HEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEHHHHHCCCCEEEECCCCCEEECCCC KRGKKSENITEYLDAGDYYLRVSAVGNAKTPYRLILENVPDDKSIDGANNLGKLSQKELK CCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHHEE VNDKIGYRENGKRDGIDLYFFEINEEQEVDINLNKLKQNSNLRLIDEDGETVLDKSTNKG ECCCCCCCCCCCCCCEEEEEEEECCCCEEEEEHHHHCCCCCEEEECCCCCEEECCCCCCC KNSEKITEVLEPGIYYVEVYAQGNAKTNYELSLSSQEVNTVFPSVLETYESGTRVGFENR CCHHHHHHHHCCCEEEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCCE VSLEIPEGWVGKQKSMFETIFEGRSFVDGQYFPFTLTSTKYPDVYVELSVRSNYLTGLIQ EEEECCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHH NLANTWAIDETTYEPQGKAKVKGNQITNTYTAKNSISQEKYYVVSTVGPNDEIATVTVGG HHHHCEECCCCCCCCCCCEEECCCEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEECC SVNKLKDYKDIANDVVESLDFPEPTDWEEFFSDHWLAYAPYGSIYEGIFLDDDRSFYHIY CHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEECCCCCCCCCEEEECCCCEEEEE DYSTNRFGTWDITQKDELVLRYENGEEKVGQLDGPSVSNNIIYGEFVYQAIEKNS ECCCCCEEEEECCCCCCEEEEECCCCHHCCCCCCCCCCCCEEEHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA