| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
Click here to switch to the map view.
The map label for this gene is 113475136
Identifier: 113475136
GI number: 113475136
Start: 2160500
End: 2162746
Strand: Reverse
Name: 113475136
Synonym: Tery_1428
Alternate gene names: NA
Gene position: 2162746-2160500 (Counterclockwise)
Preceding gene: 113475137
Following gene: 113475135
Centisome position: 27.91
GC content: 33.47
Gene sequence:
>2247_bases ATGGTTAAAACTATTGAGGCGGTTGTTAGAAAGCTATGGCTATCTCCGGAGAATGCCGTGGAAGAGGTGGTAAGATTTGA GCGTCGTTTTGGAGAAGAAAATTTTAAGCTTGCTTGTCATTGTGGGTTGTTTTTGATTTTAACTCCTGAATTAGTTAATT TAATTCGGATTAATTTTTTGGATGAGGAAAATATTCCTTGGATAGGAGAAAGTAATTTTTTGTTGTCTTCTTTATGTCGT CCTTTACAAGAGGGAGTTTATGAGGTTGAGCCTTGTGTGAGGGAAGTTTTGTTGGAGGAATTGGAGGATAAATTTGGTTG GCGACGACCTTTTGAATTGGCTGAATTTTTGTGGTTTTATTTGGATAAACAAGGGGAGAGAAAACCATCTGGAGAGTTAA GAATGGTTCAAGAATGGATTGCTCAAGCTTATTTAGATCCCGATAGGACAATTCGGGAAATGGAGAGCTTTTTATCTGAA AGTTTGCCGGAAGATAATCCGGTTTTGGGGTTAGCTGGTCAAGAAAAAATTCCTTATTTAGTGGAGATTTTGGCTCAACC TTTGGAGCAGACTAATTTATGGAAAGAGTATCAAAATTTGGTGCTTAATTCTCATGTTTTGGCAAAGTTATTGGTTGATG AAAAGGAGGGGTTAGGGGAGGAAATTGAGGAGTTAAAAGAAGAGTTTGGAGATGGGGAGGAGGTCAAATTAGGTAATGAG AAGTTTTTCTTAATTCATCCTGTTATTAAAAAGTTTTTGGCAGAGTTTCCTCCAGAAAAAGGAATAGATTATATCTGTGA AGCTAAATTACTAATTGTTGGAGAAGCTGGAGCTGGTAAAACAGCTTTAGCTAATAAAATTATCAACCCAAACTATCAAC TCAAAGATGAAGATACAACCAAAGGAATTGAAGTTTATCAGTACAACTTTAAGACAAAAAACCAAAATGACTTTCAAATA AATATTTGGGATTTTGGCGGACAAGAAATTTATCACACTACCCACCAATTTTTCTTAACAAAACGCTCTCTATATATCCT TGTCGTTGATACTCGCAAAGAAGATACAGACTTTTATTATTGGCTCAATGTAGTAGAATTATTAAGCGATAATAGCCCCT TATTAATTGTGAAAAATGAGAAACATGAACGGCAACGAGAAATTAATCAACGGGGATTGCAAGGGCAATTTACTAACATT AAAGAAATCTTAGCTACCAACCTTGAAACTAATCGCGGTTTAGAAGAAATTATCAGAGAAATCGAACATCATATTAGTGA ATTACCCCATATTGGCAGTAGTTTACCTAAAACTTGGAAACAAGTCCGGGAAATCTTAGAATTAGACTCCCGTAACTATA TTAGTCTAGAAGAATATTTATCTATTTGTAAACAAAATGGCTTGACAAAATTGGAGTATAAATTACAGTTAAGTCGCTAT TTACATGACTTAGGAATTTGTCTTCATTTTCAGGATAACCCACTGTTAAATAAAACAGTTATTCTCAAACCAGAATGGGG AATAGCGGCAGTTTATAAAATCTTAGATAATCCGACAGTTTATAATAACTTCGGCAAATTCACCAAAGATGATTTAACCA ATATCTGGAATGAAGAAAAATATGTGGATATGCGCGATGAACTACTCCAGTTAATGATTAGATTTAAACTATGTTATAAA ATTCTTGGTAATTCTCAGACCTATATTGCCCCTCAACTTTTAACAGAAAATCAACCAGAATATGACTGGGATGAAAATAA CAATTTGATTTTACGTTACACCTACAAATTTATGCCCAGAGGAATTATCACTCAGTTTATTGTAGATATGCACCGAGATA TTGAACAACAGAAATATGTTTGGAAAAGGGGAGTTATTATCAAGCAAAATGAAACCAGAGCAGAGGTAATTGAATATTAC GACAGAAGAGAAATAAAAATTAGGGTTTCTGGACGACAAAAACGGGCTTTAATGACTCTCGTAACTTACCTATTAGATAA AATTCACAGTTCCTATAATAATCGACTCAAATATAATCACTTATTTCCTTGTACTTGTGCTGCTTGTAAAAATAGCCAGA ATCCACATTTTTATAAACTTGAAAAATTAAAAGAATGGATTCGTAATGGTAGACTAAAAACTACCTGTGAGAATCATCCT TATAATGAAGTTAATATAAAGAGTTTAATTGATAATGTAATAAATATAGATTTATTATCAAAACTTAGATATATGGTACG CGATTAA
Upstream 100 bases:
>100_bases ATTGCTACGTTTATTCCTATGTATTCTTTAAATCCACAAGGATTAAATGATTTGGTTAAAATATTGTTAGGATATCCTTT TCCAATGGGAGTTAATTTGC
Downstream 100 bases:
>100_bases ATATAGCAGCAGCTCGTCCTGTAGAAATGGGAGAAAACTACACTAATAATCTAGTCACTCGACTTATTTCAGAATTAAAA CCTCGTTGTTTAGCAATGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Ras Family; Miro-Like Protein; Miro Domain-Containing Protein; Rab Family Protein; GTPase; Miro Domain Protein; ATPase Histidine Kinase- DNA Gyrase B- And; Miro-Like
Number of amino acids: Translated: 748; Mature: 748
Protein sequence:
>748_residues MVKTIEAVVRKLWLSPENAVEEVVRFERRFGEENFKLACHCGLFLILTPELVNLIRINFLDEENIPWIGESNFLLSSLCR PLQEGVYEVEPCVREVLLEELEDKFGWRRPFELAEFLWFYLDKQGERKPSGELRMVQEWIAQAYLDPDRTIREMESFLSE SLPEDNPVLGLAGQEKIPYLVEILAQPLEQTNLWKEYQNLVLNSHVLAKLLVDEKEGLGEEIEELKEEFGDGEEVKLGNE KFFLIHPVIKKFLAEFPPEKGIDYICEAKLLIVGEAGAGKTALANKIINPNYQLKDEDTTKGIEVYQYNFKTKNQNDFQI NIWDFGGQEIYHTTHQFFLTKRSLYILVVDTRKEDTDFYYWLNVVELLSDNSPLLIVKNEKHERQREINQRGLQGQFTNI KEILATNLETNRGLEEIIREIEHHISELPHIGSSLPKTWKQVREILELDSRNYISLEEYLSICKQNGLTKLEYKLQLSRY LHDLGICLHFQDNPLLNKTVILKPEWGIAAVYKILDNPTVYNNFGKFTKDDLTNIWNEEKYVDMRDELLQLMIRFKLCYK ILGNSQTYIAPQLLTENQPEYDWDENNNLILRYTYKFMPRGIITQFIVDMHRDIEQQKYVWKRGVIIKQNETRAEVIEYY DRREIKIRVSGRQKRALMTLVTYLLDKIHSSYNNRLKYNHLFPCTCAACKNSQNPHFYKLEKLKEWIRNGRLKTTCENHP YNEVNIKSLIDNVINIDLLSKLRYMVRD
Sequences:
>Translated_748_residues MVKTIEAVVRKLWLSPENAVEEVVRFERRFGEENFKLACHCGLFLILTPELVNLIRINFLDEENIPWIGESNFLLSSLCR PLQEGVYEVEPCVREVLLEELEDKFGWRRPFELAEFLWFYLDKQGERKPSGELRMVQEWIAQAYLDPDRTIREMESFLSE SLPEDNPVLGLAGQEKIPYLVEILAQPLEQTNLWKEYQNLVLNSHVLAKLLVDEKEGLGEEIEELKEEFGDGEEVKLGNE KFFLIHPVIKKFLAEFPPEKGIDYICEAKLLIVGEAGAGKTALANKIINPNYQLKDEDTTKGIEVYQYNFKTKNQNDFQI NIWDFGGQEIYHTTHQFFLTKRSLYILVVDTRKEDTDFYYWLNVVELLSDNSPLLIVKNEKHERQREINQRGLQGQFTNI KEILATNLETNRGLEEIIREIEHHISELPHIGSSLPKTWKQVREILELDSRNYISLEEYLSICKQNGLTKLEYKLQLSRY LHDLGICLHFQDNPLLNKTVILKPEWGIAAVYKILDNPTVYNNFGKFTKDDLTNIWNEEKYVDMRDELLQLMIRFKLCYK ILGNSQTYIAPQLLTENQPEYDWDENNNLILRYTYKFMPRGIITQFIVDMHRDIEQQKYVWKRGVIIKQNETRAEVIEYY DRREIKIRVSGRQKRALMTLVTYLLDKIHSSYNNRLKYNHLFPCTCAACKNSQNPHFYKLEKLKEWIRNGRLKTTCENHP YNEVNIKSLIDNVINIDLLSKLRYMVRD >Mature_748_residues MVKTIEAVVRKLWLSPENAVEEVVRFERRFGEENFKLACHCGLFLILTPELVNLIRINFLDEENIPWIGESNFLLSSLCR PLQEGVYEVEPCVREVLLEELEDKFGWRRPFELAEFLWFYLDKQGERKPSGELRMVQEWIAQAYLDPDRTIREMESFLSE SLPEDNPVLGLAGQEKIPYLVEILAQPLEQTNLWKEYQNLVLNSHVLAKLLVDEKEGLGEEIEELKEEFGDGEEVKLGNE KFFLIHPVIKKFLAEFPPEKGIDYICEAKLLIVGEAGAGKTALANKIINPNYQLKDEDTTKGIEVYQYNFKTKNQNDFQI NIWDFGGQEIYHTTHQFFLTKRSLYILVVDTRKEDTDFYYWLNVVELLSDNSPLLIVKNEKHERQREINQRGLQGQFTNI KEILATNLETNRGLEEIIREIEHHISELPHIGSSLPKTWKQVREILELDSRNYISLEEYLSICKQNGLTKLEYKLQLSRY LHDLGICLHFQDNPLLNKTVILKPEWGIAAVYKILDNPTVYNNFGKFTKDDLTNIWNEEKYVDMRDELLQLMIRFKLCYK ILGNSQTYIAPQLLTENQPEYDWDENNNLILRYTYKFMPRGIITQFIVDMHRDIEQQKYVWKRGVIIKQNETRAEVIEYY DRREIKIRVSGRQKRALMTLVTYLLDKIHSSYNNRLKYNHLFPCTCAACKNSQNPHFYKLEKLKEWIRNGRLKTTCENHP YNEVNIKSLIDNVINIDLLSKLRYMVRD
Specific function: Unknown
COG id: COG1100
COG function: function code R; GTPase SAR1 and related small G proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI171846278, Length=461, Percent_Identity=23.2104121475054, Blast_Score=93, Evalue=8e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 88380; Mature: 88380
Theoretical pI: Translated: 5.38; Mature: 5.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVKTIEAVVRKLWLSPENAVEEVVRFERRFGEENFKLACHCGLFLILTPELVNLIRINFL CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECHHHHHHHHEEEE DEENIPWIGESNFLLSSLCRPLQEGVYEVEPCVREVLLEELEDKFGWRRPFELAEFLWFY CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LDKQGERKPSGELRMVQEWIAQAYLDPDRTIREMESFLSESLPEDNPVLGLAGQEKIPYL HCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH VEILAQPLEQTNLWKEYQNLVLNSHVLAKLLVDEKEGLGEEIEELKEEFGDGEEVKLGNE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCC KFFLIHPVIKKFLAEFPPEKGIDYICEAKLLIVGEAGAGKTALANKIINPNYQLKDEDTT CEEEEHHHHHHHHHHCCCCCCCCCEECEEEEEEECCCCCHHHHHHHHCCCCCEECCCCCC KGIEVYQYNFKTKNQNDFQINIWDFGGQEIYHTTHQFFLTKRSLYILVVDTRKEDTDFYY CCEEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHEEECCEEEEEEECCCCCCHHHH WLNVVELLSDNSPLLIVKNEKHERQREINQRGLQGQFTNIKEILATNLETNRGLEEIIRE HHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH IEHHISELPHIGSSLPKTWKQVREILELDSRNYISLEEYLSICKQNGLTKLEYKLQLSRY HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH LHDLGICLHFQDNPLLNKTVILKPEWGIAAVYKILDNPTVYNNFGKFTKDDLTNIWNEEK HHHCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHCCCCH YVDMRDELLQLMIRFKLCYKILGNSQTYIAPQLLTENQPEYDWDENNNLILRYTYKFMPR HHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCCCCCCCCEEEEEEHHHCCH GIITQFIVDMHRDIEQQKYVWKRGVIIKQNETRAEVIEYYDRREIKIRVSGRQKRALMTL HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEEECCCHHHHHHHH VTYLLDKIHSSYNNRLKYNHLFPCTCAACKNSQNPHFYKLEKLKEWIRNGRLKTTCENHP HHHHHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEEECCCC YNEVNIKSLIDNVINIDLLSKLRYMVRD CCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MVKTIEAVVRKLWLSPENAVEEVVRFERRFGEENFKLACHCGLFLILTPELVNLIRINFL CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECHHHHHHHHEEEE DEENIPWIGESNFLLSSLCRPLQEGVYEVEPCVREVLLEELEDKFGWRRPFELAEFLWFY CCCCCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LDKQGERKPSGELRMVQEWIAQAYLDPDRTIREMESFLSESLPEDNPVLGLAGQEKIPYL HCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCHHH VEILAQPLEQTNLWKEYQNLVLNSHVLAKLLVDEKEGLGEEIEELKEEFGDGEEVKLGNE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEECCC KFFLIHPVIKKFLAEFPPEKGIDYICEAKLLIVGEAGAGKTALANKIINPNYQLKDEDTT CEEEEHHHHHHHHHHCCCCCCCCCEECEEEEEEECCCCCHHHHHHHHCCCCCEECCCCCC KGIEVYQYNFKTKNQNDFQINIWDFGGQEIYHTTHQFFLTKRSLYILVVDTRKEDTDFYY CCEEEEEEEEECCCCCCEEEEEEECCCCHHHHHHHHHHEEECCEEEEEEECCCCCCHHHH WLNVVELLSDNSPLLIVKNEKHERQREINQRGLQGQFTNIKEILATNLETNRGLEEIIRE HHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHHHH IEHHISELPHIGSSLPKTWKQVREILELDSRNYISLEEYLSICKQNGLTKLEYKLQLSRY HHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEHHHHHHHHHH LHDLGICLHFQDNPLLNKTVILKPEWGIAAVYKILDNPTVYNNFGKFTKDDLTNIWNEEK HHHCCEEEEECCCCCCCCEEEECCCCCHHHHHHHHCCCCEECCCCCCCHHHHHHHCCCCH YVDMRDELLQLMIRFKLCYKILGNSQTYIAPQLLTENQPEYDWDENNNLILRYTYKFMPR HHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHCCCCCCCCCCCCCCEEEEEEHHHCCH GIITQFIVDMHRDIEQQKYVWKRGVIIKQNETRAEVIEYYDRREIKIRVSGRQKRALMTL HHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHCCCEEEEEECCCHHHHHHHH VTYLLDKIHSSYNNRLKYNHLFPCTCAACKNSQNPHFYKLEKLKEWIRNGRLKTTCENHP HHHHHHHHHHHHCCCEEECCCCCHHHHHHCCCCCCCEEEHHHHHHHHHCCCEEEEECCCC YNEVNIKSLIDNVINIDLLSKLRYMVRD CCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA