| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475137
Identifier: 113475137
GI number: 113475137
Start: 2162739
End: 2163899
Strand: Reverse
Name: 113475137
Synonym: Tery_1429
Alternate gene names: NA
Gene position: 2163899-2162739 (Counterclockwise)
Preceding gene: 113475138
Following gene: 113475136
Centisome position: 27.92
GC content: 32.82
Gene sequence:
>1161_bases ATGGTTGACTTTGAATTATTAATCGTTGAATTTGAAACTATTTTATTGCCTTTATTTAATAGGTTGAGGCAAAAGGATAT TCCCGTGGGAATTTCTGAATATTTACTGGCGATTAAAATGATTCAATCTCGAGGGGCGTGGCAGGATATTGAACGTTTAA AACGACTTTTATGTTTGTTATGGGTTAAGTCTTTAGAAGACCAATATATTTTTAATCAATTGTTTGAGGAGTTAGTTAGA CCTGAGTTAGAAAAGCAATTACTAGAAGCTGATAAATCTCCATTGCCTAAAATTGATGAGGATTCTACTTCTCCTCCTCA AAAGACTGAAAATTTAGATATTAATAGTAATCCTATTTCTCAAGTTTCATCTAAAGTTCAAAAGGAAAATAAACCTCAAC CTAATCAACCAACTAATTCAATCCCAATTCGCGATTTTTCGAGAAAATCTCTGTCAGAAATAACCCCAATAAAACTGAGA TTTAGACAAAGTTATAATTTGATTCCCCGTTTACCAATAACTCGCCGAGAAATGACTAGTATTTGGCGTAATTTAAGGTT GTTAAAACGAGAGGGTGCGCCGGAAAATTTAGATGTTCAAGGAACAATTAATCTATTTTATAAAATGGGTTTTTTCTCTG GTGTGGTTTTACAACCTTCTAGAAAAAATCAAGTTAAGTTGGTTTTGTTAATTGACTGTGAAGGTTCCATGTCTCCTTTT AAATTGTTGATTGATACTTTACAGGAAAGTATTGAAAAAGTAGGGTTGTTAAATCAAAAGAATATTTTTTATTTTCACAA TGTGCCGAGGGGTTATCTATTTACTAAACCTAATTTAACTAAGCCTTTGCCTATTGAGGAAATTTTATCTCAGGAAGTTG GTAATAATAGTGTGGTTATTGTTAGTGATGGGGGGGCGGCACGGCGCACTTATGATAGTGAAAGATTCCATCAAACTAAG GAATTTATACGGCAATTATCTGATAAAACTTATTTATATGGATGGTTAAACCCTGTTCCAGAATTTCAGTGGAGGATGAC CACTGCTGAAGATATTGCTACGTTTATTCCTATGTATTCTTTAAATCCACAAGGATTAAATGATTTGGTTAAAATATTGT TAGGATATCCTTTTCCAATGGGAGTTAATTTGCATGGTTAA
Upstream 100 bases:
>100_bases TTGAGGTAAAAGAGCTTAGATTTGGTTGATTCGCGAAACTAAACACTAATAAAGCAACAAAATCCAATACCAAACCAGTA GATAAGCTGAAAATTAATAA
Downstream 100 bases:
>100_bases AACTATTGAGGCGGTTGTTAGAAAGCTATGGCTATCTCCGGAGAATGCCGTGGAAGAGGTGGTAAGATTTGAGCGTCGTT TTGGAGAAGAAAATTTTAAG
Product: hypothetical protein
Products: NA
Alternate protein names: VWA Domain Containing CoxE-Like Protein
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MVDFELLIVEFETILLPLFNRLRQKDIPVGISEYLLAIKMIQSRGAWQDIERLKRLLCLLWVKSLEDQYIFNQLFEELVR PELEKQLLEADKSPLPKIDEDSTSPPQKTENLDINSNPISQVSSKVQKENKPQPNQPTNSIPIRDFSRKSLSEITPIKLR FRQSYNLIPRLPITRREMTSIWRNLRLLKREGAPENLDVQGTINLFYKMGFFSGVVLQPSRKNQVKLVLLIDCEGSMSPF KLLIDTLQESIEKVGLLNQKNIFYFHNVPRGYLFTKPNLTKPLPIEEILSQEVGNNSVVIVSDGGAARRTYDSERFHQTK EFIRQLSDKTYLYGWLNPVPEFQWRMTTAEDIATFIPMYSLNPQGLNDLVKILLGYPFPMGVNLHG
Sequences:
>Translated_386_residues MVDFELLIVEFETILLPLFNRLRQKDIPVGISEYLLAIKMIQSRGAWQDIERLKRLLCLLWVKSLEDQYIFNQLFEELVR PELEKQLLEADKSPLPKIDEDSTSPPQKTENLDINSNPISQVSSKVQKENKPQPNQPTNSIPIRDFSRKSLSEITPIKLR FRQSYNLIPRLPITRREMTSIWRNLRLLKREGAPENLDVQGTINLFYKMGFFSGVVLQPSRKNQVKLVLLIDCEGSMSPF KLLIDTLQESIEKVGLLNQKNIFYFHNVPRGYLFTKPNLTKPLPIEEILSQEVGNNSVVIVSDGGAARRTYDSERFHQTK EFIRQLSDKTYLYGWLNPVPEFQWRMTTAEDIATFIPMYSLNPQGLNDLVKILLGYPFPMGVNLHG >Mature_386_residues MVDFELLIVEFETILLPLFNRLRQKDIPVGISEYLLAIKMIQSRGAWQDIERLKRLLCLLWVKSLEDQYIFNQLFEELVR PELEKQLLEADKSPLPKIDEDSTSPPQKTENLDINSNPISQVSSKVQKENKPQPNQPTNSIPIRDFSRKSLSEITPIKLR FRQSYNLIPRLPITRREMTSIWRNLRLLKREGAPENLDVQGTINLFYKMGFFSGVVLQPSRKNQVKLVLLIDCEGSMSPF KLLIDTLQESIEKVGLLNQKNIFYFHNVPRGYLFTKPNLTKPLPIEEILSQEVGNNSVVIVSDGGAARRTYDSERFHQTK EFIRQLSDKTYLYGWLNPVPEFQWRMTTAEDIATFIPMYSLNPQGLNDLVKILLGYPFPMGVNLHG
Specific function: Unknown
COG id: COG3825
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44708; Mature: 44708
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVDFELLIVEFETILLPLFNRLRQKDIPVGISEYLLAIKMIQSRGAWQDIERLKRLLCLL CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH WVKSLEDQYIFNQLFEELVRPELEKQLLEADKSPLPKIDEDSTSPPQKTENLDINSNPIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH QVSSKVQKENKPQPNQPTNSIPIRDFSRKSLSEITPIKLRFRQSYNLIPRLPITRREMTS HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH IWRNLRLLKREGAPENLDVQGTINLFYKMGFFSGVVLQPSRKNQVKLVLLIDCEGSMSPF HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCHH KLLIDTLQESIEKVGLLNQKNIFYFHNVPRGYLFTKPNLTKPLPIEEILSQEVGNNSVVI HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEE VSDGGAARRTYDSERFHQTKEFIRQLSDKTYLYGWLNPVPEFQWRMTTAEDIATFIPMYS EECCCCHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHCCCC LNPQGLNDLVKILLGYPFPMGVNLHG CCCCCHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MVDFELLIVEFETILLPLFNRLRQKDIPVGISEYLLAIKMIQSRGAWQDIERLKRLLCLL CCCCEEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH WVKSLEDQYIFNQLFEELVRPELEKQLLEADKSPLPKIDEDSTSPPQKTENLDINSNPIS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH QVSSKVQKENKPQPNQPTNSIPIRDFSRKSLSEITPIKLRFRQSYNLIPRLPITRREMTS HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCCCCHHHHHH IWRNLRLLKREGAPENLDVQGTINLFYKMGFFSGVVLQPSRKNQVKLVLLIDCEGSMSPF HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEECCCCCCHH KLLIDTLQESIEKVGLLNQKNIFYFHNVPRGYLFTKPNLTKPLPIEEILSQEVGNNSVVI HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEE VSDGGAARRTYDSERFHQTKEFIRQLSDKTYLYGWLNPVPEFQWRMTTAEDIATFIPMYS EECCCCHHCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCHHHHHHHHCCCC LNPQGLNDLVKILLGYPFPMGVNLHG CCCCCHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA