| Definition | Trichodesmium erythraeum IMS101 chromosome, complete genome. |
|---|---|
| Accession | NC_008312 |
| Length | 7,750,108 |
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The map label for this gene is 113475065
Identifier: 113475065
GI number: 113475065
Start: 2032658
End: 2034337
Strand: Reverse
Name: 113475065
Synonym: Tery_1337
Alternate gene names: NA
Gene position: 2034337-2032658 (Counterclockwise)
Preceding gene: 113475067
Following gene: 113475064
Centisome position: 26.25
GC content: 41.13
Gene sequence:
>1680_bases ATGCTTTTCCCTTCAGAAAGTCCTTGCCTCAGCATAGCCCTCGCGCGCCTAAGCATCCCAGAAGCTAATCACTTTGCCGT CTGGGTCATGCAGGCTCCTTTTCAGCGAGGATATGTCCACCATGACCAGGTCTGGCCAGAAACCTTATCAAAAGCTTGGC AGACTTGGTTAGAGGTCTTCTCTCCCCAAAGTTTACCGGCTATTCCAATAGGTAATTCTCAACCGACATTAGCATCAACC CCAAATATTCATTCTGTTTCTAAATCTGGTATCAAATTAAATCTTACCAGTCGCCTAATGCAAAATCTAGGTATTAATCT CTGGCAGTGGCTATTTCAAGGAGAAATTGCTCATAGTCTCCACCAAAGTCAAGGTATTGCGATTGGCCAAGAGCTGCCCT TACGGGTAAGGTTAGATATTCGGGAACCTGAATTAATTGCTCTACCCTGGGAAATTATGCAACCAGGAGTGGCTTTACCC GCTTTTTCCCTAAGTCAGGAAATTTTGTTCAGCCGTACCACCAGTGATGTTAACCCCTTACGCAACCAAGCACCTTCCCA ATGCCTAAATATTTTGTTGGTAATTGGGGAAAGTAGCCCTAAGGGAAAATCTTCTACAGGTAATGGCCATAAATCTCTAG TTCTATCCAAATTAAAACTTGAGGAAGAAGTTGCCCAATTAATTGAGGTTTTGAAGGCTCGCAACATCACAAACTCAAAT ATACCTAGAGTTAATCCTACTATTCCTTGTAGAGTGGATACACTAATTCAGCCCACTCCCAAAGAATTAACTTCCTATCT AGATAAAAAAACTTATAATGTAGTTTTTTATGCTGGTCACGGTATACCAGGTCCAGATGGAGGTTGGTTATTTTTAGCGC CTGATACAACCCTCAATGGTACTGAGTTAGCACAAATTTTAGTGCGCAATGGAGTAAGGTTGGCAGTATTCAATGCTTGC TGGGGAGCACAACCTGCTACAGAGCGTCTATCTTCTGGTGAGGTACAGGCAATACCACGCAGTAGTCTGGCAGAAGTATT AATCCATCATGGAGTACCTGCGGTTTTAGGGATGCGAGATGAAATTGCTGATCGAGAAGCTTTAAGTTTTATTCAAGTTT TTGCTCAAAGTTTGACGGAGGGAATGTTGATAGATCAGGCAGTAGTAATCGCAAGACAGCAGTTATTAACTCTTTATAGG TTTAATAAGCCAGCTTGGACTTTGCCAGTATTGTATATGCACCCGGAGTTCAATGGTCAATTAGTTCAAGTATTTGATGA ATTAGTAACTCAACTACCTACTAACTCTCAGACTTGGATTAACGGTTACACTTCTAAAGCTTTTTTACGTTCTCAAGATG ATAATAATCAAGTTTGGCCAATTTTGATTGATCCAATCGCTGTTGGACGTTCTCAGGAAAATGATGTGGTGATTTGGGAG CGGTGGGTTTCCCAAAAACACGCGGAAATTTTTTGTCGCTGCTTGCCGAATGAAGAACTTGAACCTACTTATTTTTTACG AGATATTTCTCGTTTTGGGACTTTGATTTATCGGTCTGGTACTTGGCAAAGAATACATCGTGATCAGCTTGTTATAAAAT CAGGAACACTGTTAAAATTTGGCAGTTCTCAAGGTCAAGTTTTTGAGTTTGTGATTGAAACAACAGAAGACCTAAGTTAG
Upstream 100 bases:
>100_bases GTCTTTAAATACTCTTTTACTAATGCGGATTTGAGATAAAGTAGCATGAAAGTAGCATAGATTTCTTCAAGTATATTAAG AATAGTATAGAAAAAGTTGA
Downstream 100 bases:
>100_bases TTAATCAAAATGAGATTACGGAACTAACTAAGTTGTTGTTGTAGCTTATGTCAGTAGGAAGTAAAAATATTGCTAATTAT TCTGAATTCAGCTATGCCTA
Product: FHA domain-containing protein
Products: NA
Alternate protein names: Heterocyst Differentiation Protein HetF; FHA Domain Containing Protein; Heterocyst Differentiation Protein; Chase2 Sensor Protein; TPR Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein; FHA Domain Protein
Number of amino acids: Translated: 559; Mature: 559
Protein sequence:
>559_residues MLFPSESPCLSIALARLSIPEANHFAVWVMQAPFQRGYVHHDQVWPETLSKAWQTWLEVFSPQSLPAIPIGNSQPTLAST PNIHSVSKSGIKLNLTSRLMQNLGINLWQWLFQGEIAHSLHQSQGIAIGQELPLRVRLDIREPELIALPWEIMQPGVALP AFSLSQEILFSRTTSDVNPLRNQAPSQCLNILLVIGESSPKGKSSTGNGHKSLVLSKLKLEEEVAQLIEVLKARNITNSN IPRVNPTIPCRVDTLIQPTPKELTSYLDKKTYNVVFYAGHGIPGPDGGWLFLAPDTTLNGTELAQILVRNGVRLAVFNAC WGAQPATERLSSGEVQAIPRSSLAEVLIHHGVPAVLGMRDEIADREALSFIQVFAQSLTEGMLIDQAVVIARQQLLTLYR FNKPAWTLPVLYMHPEFNGQLVQVFDELVTQLPTNSQTWINGYTSKAFLRSQDDNNQVWPILIDPIAVGRSQENDVVIWE RWVSQKHAEIFCRCLPNEELEPTYFLRDISRFGTLIYRSGTWQRIHRDQLVIKSGTLLKFGSSQGQVFEFVIETTEDLS
Sequences:
>Translated_559_residues MLFPSESPCLSIALARLSIPEANHFAVWVMQAPFQRGYVHHDQVWPETLSKAWQTWLEVFSPQSLPAIPIGNSQPTLAST PNIHSVSKSGIKLNLTSRLMQNLGINLWQWLFQGEIAHSLHQSQGIAIGQELPLRVRLDIREPELIALPWEIMQPGVALP AFSLSQEILFSRTTSDVNPLRNQAPSQCLNILLVIGESSPKGKSSTGNGHKSLVLSKLKLEEEVAQLIEVLKARNITNSN IPRVNPTIPCRVDTLIQPTPKELTSYLDKKTYNVVFYAGHGIPGPDGGWLFLAPDTTLNGTELAQILVRNGVRLAVFNAC WGAQPATERLSSGEVQAIPRSSLAEVLIHHGVPAVLGMRDEIADREALSFIQVFAQSLTEGMLIDQAVVIARQQLLTLYR FNKPAWTLPVLYMHPEFNGQLVQVFDELVTQLPTNSQTWINGYTSKAFLRSQDDNNQVWPILIDPIAVGRSQENDVVIWE RWVSQKHAEIFCRCLPNEELEPTYFLRDISRFGTLIYRSGTWQRIHRDQLVIKSGTLLKFGSSQGQVFEFVIETTEDLS >Mature_559_residues MLFPSESPCLSIALARLSIPEANHFAVWVMQAPFQRGYVHHDQVWPETLSKAWQTWLEVFSPQSLPAIPIGNSQPTLAST PNIHSVSKSGIKLNLTSRLMQNLGINLWQWLFQGEIAHSLHQSQGIAIGQELPLRVRLDIREPELIALPWEIMQPGVALP AFSLSQEILFSRTTSDVNPLRNQAPSQCLNILLVIGESSPKGKSSTGNGHKSLVLSKLKLEEEVAQLIEVLKARNITNSN IPRVNPTIPCRVDTLIQPTPKELTSYLDKKTYNVVFYAGHGIPGPDGGWLFLAPDTTLNGTELAQILVRNGVRLAVFNAC WGAQPATERLSSGEVQAIPRSSLAEVLIHHGVPAVLGMRDEIADREALSFIQVFAQSLTEGMLIDQAVVIARQQLLTLYR FNKPAWTLPVLYMHPEFNGQLVQVFDELVTQLPTNSQTWINGYTSKAFLRSQDDNNQVWPILIDPIAVGRSQENDVVIWE RWVSQKHAEIFCRCLPNEELEPTYFLRDISRFGTLIYRSGTWQRIHRDQLVIKSGTLLKFGSSQGQVFEFVIETTEDLS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62622; Mature: 62622
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50006 FHA_DOMAIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFPSESPCLSIALARLSIPEANHFAVWVMQAPFQRGYVHHDQVWPETLSKAWQTWLEVF CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHH SPQSLPAIPIGNSQPTLASTPNIHSVSKSGIKLNLTSRLMQNLGINLWQWLFQGEIAHSL CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHH HQSQGIAIGQELPLRVRLDIREPELIALPWEIMQPGVALPAFSLSQEILFSRTTSDVNPL HHHCCCEECCCCCEEEEEECCCCCEEECCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHH RNQAPSQCLNILLVIGESSPKGKSSTGNGHKSLVLSKLKLEEEVAQLIEVLKARNITNSN HHCCHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IPRVNPTIPCRVDTLIQPTPKELTSYLDKKTYNVVFYAGHGIPGPDGGWLFLAPDTTLNG CCCCCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCH TELAQILVRNGVRLAVFNACWGAQPATERLSSGEVQAIPRSSLAEVLIHHGVPAVLGMRD HHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCEEECCHHHHHHHHHHCCCHHHHCCHH EIADREALSFIQVFAQSLTEGMLIDQAVVIARQQLLTLYRFNKPAWTLPVLYMHPEFNGQ HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH LVQVFDELVTQLPTNSQTWINGYTSKAFLRSQDDNNQVWPILIDPIAVGRSQENDVVIWE HHHHHHHHHHHCCCCCCCEECCCCCHHHEECCCCCCCEEEEEECCEECCCCCCCCEEEEH RWVSQKHAEIFCRCLPNEELEPTYFLRDISRFGTLIYRSGTWQRIHRDQLVIKSGTLLKF HHHCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHEEECCCCHHHHCCCEEEEECCCEEEE GSSQGQVFEFVIETTEDLS CCCCCCEEEEEEHHHCCCC >Mature Secondary Structure MLFPSESPCLSIALARLSIPEANHFAVWVMQAPFQRGYVHHDQVWPETLSKAWQTWLEVF CCCCCCCCHHHHHHHHHCCCCCCCEEEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHH SPQSLPAIPIGNSQPTLASTPNIHSVSKSGIKLNLTSRLMQNLGINLWQWLFQGEIAHSL CCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCHHHHHHHHHHHHHHHH HQSQGIAIGQELPLRVRLDIREPELIALPWEIMQPGVALPAFSLSQEILFSRTTSDVNPL HHHCCCEECCCCCEEEEEECCCCCEEECCHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHH RNQAPSQCLNILLVIGESSPKGKSSTGNGHKSLVLSKLKLEEEVAQLIEVLKARNITNSN HHCCHHHHEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IPRVNPTIPCRVDTLIQPTPKELTSYLDKKTYNVVFYAGHGIPGPDGGWLFLAPDTTLNG CCCCCCCCCEEECCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCCCH TELAQILVRNGVRLAVFNACWGAQPATERLSSGEVQAIPRSSLAEVLIHHGVPAVLGMRD HHHHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCEEECCHHHHHHHHHHCCCHHHHCCHH EIADREALSFIQVFAQSLTEGMLIDQAVVIARQQLLTLYRFNKPAWTLPVLYMHPEFNGQ HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCH LVQVFDELVTQLPTNSQTWINGYTSKAFLRSQDDNNQVWPILIDPIAVGRSQENDVVIWE HHHHHHHHHHHCCCCCCCEECCCCCHHHEECCCCCCCEEEEEECCEECCCCCCCCEEEEH RWVSQKHAEIFCRCLPNEELEPTYFLRDISRFGTLIYRSGTWQRIHRDQLVIKSGTLLKF HHHCCHHHHHHHEECCCCCCCHHHHHHHHHHHHHEEECCCCHHHHCCCEEEEECCCEEEE GSSQGQVFEFVIETTEDLS CCCCCCEEEEEEHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA