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The map label for this gene is dapF

Identifier: 113474945

GI number: 113474945

Start: 1833837

End: 1834673

Strand: Direct

Name: dapF

Synonym: Tery_1173

Alternate gene names: 113474945

Gene position: 1833837-1834673 (Clockwise)

Preceding gene: 113474941

Following gene: 113474946

Centisome position: 23.66

GC content: 37.75

Gene sequence:

>837_bases
ATGACAAAATCATTCACTAAATATCATGGTCTAGGGAACGATTTTATTTTGATTGATAATCGCCACCAATTACAGCCTAT
ACTAACACCAGAACAAGCAATAGAATTGTGCGATCGCAATTTTGGTATTGGTGCAGATGGTGTAATTTTTGCTCTACCTG
GAGTGAAGCAAACTGATTATACCATGCGGATTTTCAATTCTGATGGTTCAGAGCCTGAAATGTGTGGAAATGGGATTAGA
TGTTTAGCTAAGTTTATAGCAGAACTAGAAAACAATAACAAGACTAAATATAATATCCATACCGGTGCCGGTATAATTGT
TCCTGAATTGCAAGGTGATGGTCAAGTAACAGTTGATATGGGACAACCCAGACTTTTGGCATCGGAAATACCGACAACTT
TAGCTAATGCTGATGATAAAGTTGTGGATCAACTCTTAGAAGTAGGTGGAAAGTCTTGGTTTGTTACCTGTGTGAGTATG
GGAAACCCCCACTGCATAACTTTTGTAGAAGATGTTACTGCTATAGATTTAGCTAAAATAGGTCCTAAATTTGAACATAA
CCCAGTATTTCCAGAACGTACTAATACAGAATTTATTCAAGTTATTAGTCCAAAATATGTGAAGATGCGAGTATGGGAAA
GAGGAGCTGGTGCAACACTTGCTTGTGGTACAGGAGCATGCGCGTCAGTTGTGGCAGGAGTTTTAACTCAAAATAATGAG
CGCTTAGTTACAGTAGAGTTACCTGGAGGTTGTTTGGAAATTGAATGGTCAACTATAGACCAAAAAATTTATATGACTGG
ACCGGCAGAAAAAGTATTTACAGGAATCATAGCATAA

Upstream 100 bases:

>100_bases
TGGCGAGTACTTGGTAAACTTGTATCAAAATCAGACATAATTACTATTTGATATATTTTCTGTCAGAGTAAATTTTTACC
TAATTATTTGGAGCATAATA

Downstream 100 bases:

>100_bases
GTAAGAAGTCAGATAGGGGAGTTGTCAGATTGGTGAGGTACAAAATTTAAATTTGGAGTATGAACTATATTTGAAAGTGC
AATAATATCGTAACTGTCTT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTKSFTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIR
CLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPRLLASEIPTTLANADDKVVDQLLEVGGKSWFVTCVSM
GNPHCITFVEDVTAIDLAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE
RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGIIA

Sequences:

>Translated_278_residues
MTKSFTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIR
CLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPRLLASEIPTTLANADDKVVDQLLEVGGKSWFVTCVSM
GNPHCITFVEDVTAIDLAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE
RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGIIA
>Mature_277_residues
TKSFTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDYTMRIFNSDGSEPEMCGNGIRC
LAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDMGQPRLLASEIPTTLANADDKVVDQLLEVGGKSWFVTCVSMG
NPHCITFVEDVTAIDLAKIGPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNER
LVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGIIA

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family

Homologues:

Organism=Escherichia coli, GI87082334, Length=275, Percent_Identity=40, Blast_Score=206, Evalue=1e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): DAPF_TRIEI (Q116P1)

Other databases:

- EMBL:   CP000393
- RefSeq:   YP_721006.1
- ProteinModelPortal:   Q116P1
- SMR:   Q116P1
- STRING:   Q116P1
- GeneID:   4244057
- GenomeReviews:   CP000393_GR
- KEGG:   ter:Tery_1173
- NMPDR:   fig|203124.1.peg.3495
- eggNOG:   COG0253
- HOGENOM:   HBG399442
- OMA:   HTGIGFD
- PhylomeDB:   Q116P1
- ProtClustDB:   PRK00450
- BioCyc:   TERY203124:TERY_1173-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00197
- InterPro:   IPR001653
- InterPro:   IPR018510
- TIGRFAMs:   TIGR00652

Pfam domain/function: PF01678 DAP_epimerase

EC number: =5.1.1.7

Molecular weight: Translated: 30279; Mature: 30148

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: ACT_SITE 75-75 ACT_SITE 222-222

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSFTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDY
CCCCCCHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
TMRIFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDM
EEEEECCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCEEEEEC
GQPRLLASEIPTTLANADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVEDVTAIDLAKI
CCCEEEHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCHHHHHHHC
GPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE
CCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHCCCCC
RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGIIA
EEEEEECCCCEEEEEEECCCCEEEEECCHHHHHHHHCC
>Mature Secondary Structure 
TKSFTKYHGLGNDFILIDNRHQLQPILTPEQAIELCDRNFGIGADGVIFALPGVKQTDY
CCCCCHHCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCE
TMRIFNSDGSEPEMCGNGIRCLAKFIAELENNNKTKYNIHTGAGIIVPELQGDGQVTVDM
EEEEECCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEECCCCEEEEEC
GQPRLLASEIPTTLANADDKVVDQLLEVGGKSWFVTCVSMGNPHCITFVEDVTAIDLAKI
CCCEEEHHHCCHHHCCCCHHHHHHHHHHCCCEEEEEEEECCCCEEEEEECCCHHHHHHHC
GPKFEHNPVFPERTNTEFIQVISPKYVKMRVWERGAGATLACGTGACASVVAGVLTQNNE
CCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCCEEEECCCHHHHHHHHHHCCCCC
RLVTVELPGGCLEIEWSTIDQKIYMTGPAEKVFTGIIA
EEEEEECCCCEEEEEEECCCCEEEEECCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA